Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CEP79_RS03675 | Genome accession | NZ_CP027404 |
| Coordinates | 743021..744151 (+) | Length | 376 a.a. |
| NCBI ID | WP_001045766.1 | Uniprot ID | Q9ZN24 |
| Organism | Helicobacter pylori strain FDAARGOS_300 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 738021..749151
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CEP79_RS03640 (CEP79_03640) | panD | 738448..738801 (+) | 354 | WP_000142257.1 | aspartate 1-decarboxylase | - |
| CEP79_RS03645 (CEP79_03645) | - | 738804..739106 (+) | 303 | WP_000347931.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CEP79_RS03650 (CEP79_03650) | - | 739106..740110 (+) | 1005 | WP_000468465.1 | PDZ domain-containing protein | - |
| CEP79_RS03655 (CEP79_03655) | comB6 | 740118..741173 (+) | 1056 | WP_000679725.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CEP79_RS03660 (CEP79_03660) | comB7 | 741189..741302 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| CEP79_RS03665 (CEP79_03665) | comB8 | 741299..742042 (+) | 744 | WP_000660577.1 | virB8 family protein | Machinery gene |
| CEP79_RS03670 (CEP79_03670) | comB9 | 742042..743028 (+) | 987 | WP_001878684.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CEP79_RS03675 (CEP79_03675) | comB10 | 743021..744151 (+) | 1131 | WP_001045766.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CEP79_RS03680 (CEP79_03680) | - | 744221..745633 (+) | 1413 | WP_000694964.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CEP79_RS03685 (CEP79_03685) | gmd | 745674..746819 (+) | 1146 | WP_046655973.1 | GDP-mannose 4,6-dehydratase | - |
| CEP79_RS03690 (CEP79_03690) | - | 746812..747744 (+) | 933 | WP_001002487.1 | GDP-L-fucose synthase | - |
| CEP79_RS08175 (CEP79_03695) | - | 748141..748437 (-) | 297 | WP_000466434.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41989.41 Da Isoelectric Point: 9.7473
>NTDB_id=276918 CEP79_RS03675 WP_001045766.1 743021..744151(+) (comB10) [Helicobacter pylori strain FDAARGOS_300]
MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=276918 CEP79_RS03675 WP_001045766.1 743021..744151(+) (comB10) [Helicobacter pylori strain FDAARGOS_300]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATTACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATTACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.479 |
100 |
0.955 |