Detailed information NTG0276917

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CEP79_RS03670
• Genome accession: NZ_CP027404
• Coordinates: 742042..743028 (+)
• Length: 328 a.a.
• NCBI ID: WP_001878684.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain FDAARGOS_300
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 737042..748028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CEP79_RS03640 (CEP79_03640)	panD	738448..738801 (+)	354	WP_000142257.1	aspartate 1-decarboxylase	-
CEP79_RS03645 (CEP79_03645)	-	738804..739106 (+)	303	WP_000347931.1	YbaB/EbfC family nucleoid-associated protein	-
CEP79_RS03650 (CEP79_03650)	-	739106..740110 (+)	1005	WP_000468465.1	PDZ domain-containing protein	-
CEP79_RS03655 (CEP79_03655)	comB6	740118..741173 (+)	1056	WP_000679725.1	P-type conjugative transfer protein TrbL	Machinery gene
CEP79_RS03660 (CEP79_03660)	comB7	741189..741302 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
CEP79_RS03665 (CEP79_03665)	comB8	741299..742042 (+)	744	WP_000660577.1	virB8 family protein	Machinery gene
CEP79_RS03670 (CEP79_03670)	comB9	742042..743028 (+)	987	WP_001878684.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CEP79_RS03675 (CEP79_03675)	comB10	743021..744151 (+)	1131	WP_001045766.1	DNA type IV secretion system protein ComB10	Machinery gene
CEP79_RS03680 (CEP79_03680)	-	744221..745633 (+)	1413	WP_000694964.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CEP79_RS03685 (CEP79_03685)	gmd	745674..746819 (+)	1146	WP_046655973.1	GDP-mannose 4,6-dehydratase	-
CEP79_RS03690 (CEP79_03690)	-	746812..747744 (+)	933	WP_001002487.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 38029.85 Da
• Isoelectric Point: 9.7120

>NTDB_id=276917 CEP79_RS03670 WP_001878684.1 742042..743028(+) (comB9) [Helicobacter pylori strain FDAARGOS_300]
MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIR
FVKRRKGE

Nucleotide

• Length: 987 bp

>NTDB_id=276917 CEP79_RS03670 WP_001878684.1 742042..743028(+) (comB9) [Helicobacter pylori strain FDAARGOS_300]
ATGCGTAAGGTTTTATACGCTCTCATGGGCTTTTTGTTGGTTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGTTTTGATGCGAAAATTTTAGAAAG
CAATGATCGCATTTTACTCATCAAACCCTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGTCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAGATTAGCACTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGTTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGCGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	93.293	100	0.933