Detailed information NTG0027684

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: CD630_RS03915
• Genome accession: NC_009089
• Coordinates: 809639..810346 (+)
• Length: 235 a.a.
• NCBI ID: WP_009888460.1
• Uniprot ID: A0A9Q8EBL8
• Organism: Clostridioides difficile 630
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 804639..815346

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CD630_RS03890 (CD630_06641)	cdd1	805434..805679 (+)	246	WP_009888450.1	protein Cdd1	-
CD630_RS03895 (CD630_06642)	-	805897..806166 (-)	270	WP_003426848.1	DUF3795 domain-containing protein	-
CD630_RS03900 (CD630_06650)	-	807044..807781 (-)	738	WP_011860906.1	ABC transporter permease	-
CD630_RS03905 (CD630_06660)	-	807793..808554 (-)	762	WP_011860907.1	ABC transporter permease	-
CD630_RS03910 (CD630_06670)	-	808554..809477 (-)	924	WP_031280291.1	ABC transporter ATP-binding protein	-
CD630_RS03915 (CD630_06680)	scnR	809639..810346 (+)	708	WP_009888460.1	response regulator transcription factor	Regulator
CD630_RS03920 (CD630_06690)	-	810391..811797 (+)	1407	WP_011860909.1	sensor histidine kinase	-
CD630_RS03925 (CD630_06700)	-	813559..813948 (+)	390	WP_003426867.1	BlaI/MecI/CopY family transcriptional regulator	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26716.17 Da
• Isoelectric Point: 6.1467

>NTDB_id=27684 CD630_RS03915 WP_009888460.1 809639..810346(+) (scnR) [Clostridioides difficile 630]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVRVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKDGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide

• Length: 708 bp

>NTDB_id=27684 CD630_RS03915 WP_009888460.1 809639..810346(+) (scnR) [Clostridioides difficile 630]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAGGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGATGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (156-232)

• Response regulator receiver domain (Response_reg) (9-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	48.918	98.298	0.481
micA	Streptococcus pneumoniae Cp1015	40	100	0.4
vicR	Streptococcus mutans UA159	38.362	98.723	0.379