Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C6I29_RS12925 Genome accession   NZ_CP027365
Coordinates   2748478..2749113 (+) Length   211 a.a.
NCBI ID   WP_034669897.1    Uniprot ID   A0A8H2K026
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2743478..2754113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS12915 - 2745613..2746422 (-) 810 WP_034669899.1 NAD-dependent epimerase/dehydratase family protein -
  C6I29_RS12920 recG 2746446..2748491 (+) 2046 WP_034669898.1 ATP-dependent DNA helicase RecG -
  C6I29_RS12925 comF 2748478..2749113 (+) 636 WP_034669897.1 ComF family protein Machinery gene
  C6I29_RS12930 - 2749110..2749511 (-) 402 WP_034669896.1 NUDIX hydrolase -
  C6I29_RS12935 - 2749521..2750102 (-) 582 WP_105919134.1 TIGR00730 family Rossman fold protein -
  C6I29_RS12940 - 2750267..2751280 (+) 1014 WP_005018301.1 magnesium and cobalt transport protein CorA -
  C6I29_RS12945 - 2751315..2751605 (-) 291 WP_034669893.1 lipid asymmetry maintenance protein MlaB -
  C6I29_RS12950 - 2751629..2752267 (-) 639 WP_005024404.1 phospholipid-binding protein MlaC -
  C6I29_RS12955 - 2752285..2752947 (-) 663 WP_005024401.1 outer membrane lipid asymmetry maintenance protein MlaD -
  C6I29_RS12960 mlaE 2752947..2753723 (-) 777 WP_005024399.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24283.40 Da        Isoelectric Point: 8.4901

>NTDB_id=276617 C6I29_RS12925 WP_034669897.1 2748478..2749113(+) (comF) [Acinetobacter radioresistens strain DSSKY-A-001]
MPMFNPSSLLRPISRLLPCPLCSSSLQMQHGVCHDCWEQLPWYRQTVERQELDIHVACGYQYPIDRIIQQFKYEQQLNYQ
QLLTASIQTLRLPKVQAIVPMPISTERLIERGYNQSLVIAKILARELNVPVWQPVIRLAQHSQKGLSRLERLNQIEMQFQ
PILTECRRYRRVLMLDDVVTTGSSLSALAQALTRLGCQHIFAACIAVAETA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=276617 C6I29_RS12925 WP_034669897.1 2748478..2749113(+) (comF) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGCCTATGTTTAACCCATCTTCTTTACTCAGACCTATCTCACGGCTACTACCCTGCCCGCTTTGTAGCAGCAGTTTGCA
AATGCAGCATGGGGTTTGTCATGATTGCTGGGAACAGCTGCCTTGGTATCGGCAGACTGTAGAACGACAAGAATTAGACA
TTCATGTTGCCTGTGGCTATCAGTATCCAATAGATCGCATCATCCAGCAGTTTAAATATGAGCAGCAGTTAAACTATCAG
CAGTTACTGACTGCATCGATACAAACCCTCAGGTTACCTAAAGTTCAGGCCATTGTGCCTATGCCCATATCAACCGAACG
TTTAATTGAACGCGGCTATAATCAGTCACTGGTCATTGCAAAAATTCTAGCCCGTGAGCTGAATGTTCCGGTCTGGCAAC
CTGTAATTCGGCTGGCTCAGCATTCGCAAAAAGGCTTATCGCGACTCGAACGTCTGAACCAGATTGAAATGCAGTTTCAG
CCGATCCTCACCGAATGCCGGCGTTACCGCCGGGTATTAATGCTAGACGATGTAGTGACTACAGGCAGCTCACTTTCGGC
CTTGGCTCAAGCCCTGACTCGGCTGGGCTGCCAGCATATTTTTGCTGCGTGTATTGCAGTCGCAGAAACAGCCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(115-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

56.398

100

0.564
  comF Acinetobacter baumannii D1279779

56.398

100

0.564

Multiple sequence alignment