Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D6022_RS00485 Genome accession   NZ_CP032538
Coordinates   65375..67360 (-) Length   661 a.a.
NCBI ID   WP_003185651.1    Uniprot ID   Q65ED8
Organism   Bacillus licheniformis strain MT-B06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60375..72360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS00460 - 61203..61529 (-) 327 WP_003185637.1 DUF4870 domain-containing protein -
  D6022_RS00465 - 61744..61974 (+) 231 WP_003185639.1 hypothetical protein -
  D6022_RS24720 - 61981..62350 (-) 370 Protein_92 VOC family protein -
  D6022_RS00480 uvrA 62494..65367 (-) 2874 WP_003185648.1 excinuclease ABC subunit UvrA Machinery gene
  D6022_RS00485 uvrB 65375..67360 (-) 1986 WP_003185651.1 excinuclease ABC subunit UvrB Machinery gene
  D6022_RS00490 - 67544..67777 (-) 234 WP_003185654.1 CsbA family protein -
  D6022_RS00495 - 67896..68189 (-) 294 WP_003185656.1 DUF5316 domain-containing protein -
  D6022_RS00500 - 68314..69525 (-) 1212 WP_026080753.1 PDZ domain-containing protein -
  D6022_RS00505 swrA 69823..70176 (-) 354 WP_003185659.1 swarming motility protein SwrAA -
  D6022_RS00510 - 70532..71971 (-) 1440 WP_009329656.1 S41 family peptidase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76438.07 Da        Isoelectric Point: 5.0625

>NTDB_id=276559 D6022_RS00485 WP_003185651.1 65375..67360(-) (uvrB) [Bacillus licheniformis strain MT-B06]
MKDRFELVSNYQPQGDQPKAIDQLVKGINEGRKHQTLLGATGTGKTFTMSNVIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERKDVIIVASVSCIYGLGSPEEYREMVLS
LRTEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCVRVEFFGDEIERIREVDALTGEILGEREH
VAIFPASHFVTREEKMKKAIINIEEELEERLKALREEGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPAGS
TPYTLLDYFPDDFLMVIDESHVTIPQIRGMYNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHIHNIVYVSATPGPYE
LEHTPEMVEQIIRPTGLLDPIIEVRPIEGQIDDLIGEIQQRIERNERVLVTTLTKKMSEDLTDYLKEIGIKVTYLHSEIK
TLERIEIIRDLRLGKHDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITNSM
EIAINETKRRREQQEAYNEKHGITPKTINKKIRDVIRATHAAEDQEEYQVKEEPKLSKMTKKEREKVIAQMESDMKEAAK
ALDFERAAELRDLLLELKSEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=276559 D6022_RS00485 WP_003185651.1 65375..67360(-) (uvrB) [Bacillus licheniformis strain MT-B06]
GTGAAAGACCGCTTTGAATTAGTCTCGAATTATCAGCCCCAGGGGGATCAGCCGAAAGCGATTGATCAGCTTGTCAAAGG
AATCAATGAAGGCAGAAAGCATCAGACGCTTTTGGGGGCAACCGGTACTGGAAAGACGTTTACGATGTCGAACGTGATTA
AAGAGGTCAACAAACCGACTCTCGTCATCGCCCACAACAAAACGTTAGCCGGGCAGCTTTACAGCGAGTTTAAAGAATTT
TTCCCCAACAACGCAGTCGAATATTTTGTCAGCTATTATGACTATTACCAGCCTGAGGCCTACGTGCCCCAGACTGATAC
ATTTATCGAAAAAGATGCCAGCATTAACGATGAGATTGATAAATTAAGGCACTCTGCCACGTCTGCTCTTTTTGAACGCA
AAGATGTCATCATTGTGGCGAGTGTCTCTTGTATTTACGGCTTGGGTTCTCCTGAGGAATACAGGGAAATGGTGCTCTCG
CTCAGAACGGAAATGGAAATCGAGCGGAATGAGCTGCTCAGAAAGCTCGTTGACATCCAATATGCGCGGAATGACATCGA
TTTTCAGCGCGGAACATTCAGGGTGCGCGGCGATGTCGTCGAGATCTTTCCGGCTTCAAGGGATGAGCACTGCGTCCGAG
TTGAATTTTTCGGGGACGAAATCGAACGGATCAGGGAAGTGGATGCCCTGACTGGCGAAATTTTAGGGGAGAGGGAACAC
GTCGCGATCTTCCCGGCTTCCCACTTCGTCACCCGGGAAGAAAAGATGAAGAAAGCGATCATAAACATTGAAGAGGAGCT
GGAAGAGCGCCTCAAAGCGCTTCGTGAAGAAGGCAAGCTCCTTGAAGCGCAGCGTCTGGAACAGCGGACGAGATACGATT
TGGAAATGATGCGCGAAATGGGCTTTTGCTCGGGCATCGAAAACTATTCAAGACATTTGACGCTTCGTCCGGCAGGTTCG
ACTCCATATACGCTGCTCGATTACTTTCCGGATGATTTCCTGATGGTCATAGATGAGTCGCATGTCACCATACCGCAGAT
CAGAGGAATGTACAACGGAGACCAGGCGAGAAAACAGGTTCTCGTCGATCATGGATTCAGGCTGCCTTCCGCTTTGGATA
ACCGTCCGCTCAGGTTTGAAGAGTTTGAAAAGCACATTCACAACATCGTGTATGTGTCGGCTACGCCGGGGCCTTATGAA
CTTGAGCATACGCCTGAAATGGTAGAGCAGATCATCCGGCCGACAGGGCTGCTCGATCCGATTATTGAGGTAAGGCCGAT
TGAAGGGCAGATCGATGATCTGATCGGTGAAATCCAGCAGAGAATCGAGCGGAATGAACGCGTCCTCGTCACGACGCTGA
CGAAAAAAATGTCCGAGGATTTGACGGATTATCTGAAGGAAATCGGTATCAAGGTCACGTACCTGCATTCAGAGATTAAA
ACGCTGGAGCGGATCGAGATCATACGCGACCTTCGCCTCGGCAAGCATGACGTTCTCGTCGGCATCAACCTGCTGAGGGA
AGGACTCGATATTCCTGAGGTTTCACTCGTCGCCATTCTTGACGCAGACAAAGAAGGCTTTTTGCGGTCCGAACGCTCGC
TCATCCAAACGATCGGCCGCGCCGCCAGAAATGCCGAAGGCCGCGTAATCATGTATGCCGACAAAATCACCAACTCGATG
GAAATCGCAATCAATGAAACGAAGCGCCGCCGCGAACAGCAGGAGGCTTATAATGAGAAACACGGCATTACGCCGAAAAC
GATCAACAAAAAGATCAGGGACGTCATCCGGGCAACTCATGCTGCTGAAGACCAGGAAGAATATCAAGTGAAAGAGGAGC
CGAAGCTTTCGAAGATGACGAAGAAAGAGCGGGAAAAAGTGATCGCTCAAATGGAAAGCGACATGAAGGAAGCGGCAAAA
GCGCTTGACTTTGAACGCGCCGCCGAGCTTCGCGACTTGCTCCTAGAGTTAAAATCGGAAGGATGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB/uvrC motif (UVR)

(625-659)

Helicase conserved C-terminal domain (Helicase_C)

(437-544)

Type III restriction enzyme, res subunit (ResIII)

(13-138)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65ED8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.624

99.395

0.702
  uvrB Streptococcus pneumoniae R6

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae D39

70.472

99.395

0.7

Multiple sequence alignment