Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C6B32_RS06035 Genome accession   NZ_CP027287
Coordinates   1208867..1209634 (-) Length   255 a.a.
NCBI ID   WP_039362573.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain 772     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1203867..1214634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6B32_RS06005 (C6B32_06005) tatB 1204162..1204617 (+) 456 WP_023385380.1 Sec-independent protein translocase protein TatB -
  C6B32_RS06010 (C6B32_06010) tatC 1204617..1205372 (+) 756 WP_058909383.1 twin-arginine translocase subunit TatC -
  C6B32_RS06015 (C6B32_06015) queA 1205369..1206388 (+) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C6B32_RS06020 (C6B32_06020) - 1206399..1207628 (+) 1230 WP_023385386.1 hypothetical protein -
  C6B32_RS06025 (C6B32_06025) - 1207625..1208488 (-) 864 WP_065838718.1 SAM-dependent methyltransferase -
  C6B32_RS06030 (C6B32_06030) dprB 1208496..1208870 (-) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  C6B32_RS06035 (C6B32_06035) dprA 1208867..1209634 (-) 768 WP_039362573.1 DNA-processing protein DprA Machinery gene
  C6B32_RS06040 (C6B32_06040) - 1209618..1210781 (-) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  C6B32_RS06045 (C6B32_06045) ilvC 1210782..1211804 (-) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  C6B32_RS06050 (C6B32_06050) - 1211951..1212763 (+) 813 WP_058909385.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28172.24 Da        Isoelectric Point: 5.1410

>NTDB_id=276179 C6B32_RS06035 WP_039362573.1 1208867..1209634(-) (dprA) [Campylobacter fetus subsp. testudinum strain 772]
MDFITDILSLKKLKKPVNRLYYKGNLELLNFPKVAIVGSRKCTSYTKNLVLNLASTLKNYGICVVSGAAIGADIHAHEGA
FPNTIAVFGNGLDNIYPAQNSKMIEKIYKDALALSEYEPNALATPWSFLERNRIVVALSDAVIIAEADMKSGSMSSARLA
LDMGIPLFVLPQRLNESNGTNDLLSKNRANLISDFDEFASKFGSLNSDLSKDDVLEFIKTNQNFDECYARFGDALYEYEL
DGKISIDGVYVRLLS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=276179 C6B32_RS06035 WP_039362573.1 1208867..1209634(-) (dprA) [Campylobacter fetus subsp. testudinum strain 772]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAGACTATACTATAAAGGAAATTTAGA
ACTTTTAAATTTCCCTAAAGTAGCGATAGTTGGCTCAAGAAAATGCACTTCTTATACAAAAAATCTTGTTTTAAATTTAG
CTTCTACTCTTAAAAATTACGGTATTTGCGTAGTGAGCGGAGCTGCTATAGGCGCTGATATACATGCTCACGAAGGTGCT
TTTCCAAACACCATCGCAGTTTTTGGAAATGGACTTGATAACATATATCCAGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGATGCGTTAGCTCTTAGCGAGTATGAGCCTAATGCTCTTGCGACTCCTTGGAGTTTTTTAGAAAGAAATAGGA
TAGTCGTAGCTCTAAGCGACGCCGTGATAATAGCAGAAGCAGATATGAAAAGTGGATCAATGTCTAGTGCAAGACTTGCT
TTGGATATGGGAATTCCTCTTTTTGTGTTGCCTCAAAGACTTAATGAGAGTAATGGAACAAATGATCTGCTTAGTAAAAA
CAGAGCAAATTTAATATCTGATTTTGATGAGTTTGCTTCTAAATTTGGAAGTCTAAATAGTGATTTAAGCAAAGATGATG
TTTTGGAGTTTATAAAAACAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATATGAACTA
GATGGTAAAATCTCTATAGATGGAGTATATGTAAGGCTTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.17

92.157

0.518
  dprA Helicobacter pylori 26695

48.75

94.118

0.459

Multiple sequence alignment