Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   C6B32_RS06030 Genome accession   NZ_CP027287
Coordinates   1208496..1208870 (-) Length   124 a.a.
NCBI ID   WP_023385389.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain 772     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1203496..1213870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6B32_RS06005 (C6B32_06005) tatB 1204162..1204617 (+) 456 WP_023385380.1 Sec-independent protein translocase protein TatB -
  C6B32_RS06010 (C6B32_06010) tatC 1204617..1205372 (+) 756 WP_058909383.1 twin-arginine translocase subunit TatC -
  C6B32_RS06015 (C6B32_06015) queA 1205369..1206388 (+) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  C6B32_RS06020 (C6B32_06020) - 1206399..1207628 (+) 1230 WP_023385386.1 hypothetical protein -
  C6B32_RS06025 (C6B32_06025) - 1207625..1208488 (-) 864 WP_065838718.1 SAM-dependent methyltransferase -
  C6B32_RS06030 (C6B32_06030) dprB 1208496..1208870 (-) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  C6B32_RS06035 (C6B32_06035) dprA 1208867..1209634 (-) 768 WP_039362573.1 DNA-processing protein DprA Machinery gene
  C6B32_RS06040 (C6B32_06040) - 1209618..1210781 (-) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  C6B32_RS06045 (C6B32_06045) ilvC 1210782..1211804 (-) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  C6B32_RS06050 (C6B32_06050) - 1211951..1212763 (+) 813 WP_058909385.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13650.08 Da        Isoelectric Point: 8.4775

>NTDB_id=276178 C6B32_RS06030 WP_023385389.1 1208496..1208870(-) (dprB) [Campylobacter fetus subsp. testudinum strain 772]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DAEIIYVDEAYSSCEASELSKDSKDGKFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=276178 C6B32_RS06030 WP_023385389.1 1208496..1208870(-) (dprB) [Campylobacter fetus subsp. testudinum strain 772]
TTGATAGTAGCTATCGATGTTGGACTAAAAAGAATAGGAGTTGCGGTTGCTGTTTTGCCGACTGTTGTGCTTCCTAGTGA
GCCTATTTTACGTAAAAATCGCAATCAAGCAGCAAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCAACAAAACTAG
TAGTTGGTTTGCCAAAAGGCGGTAGCTGCGAAGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTGGTGGGTTTT
GATGCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGTGAATTATCCAAAGATTCTAAAGATGGCAA
ATTTGATAGTATCGCTGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.612

100

0.516

Multiple sequence alignment