Detailed information NTG0276100

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6N17_RS17510
• Genome accession: NZ_CP027254
• Coordinates: 3482049..3482909 (+)
• Length: 286 a.a.
• NCBI ID: WP_002114758.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain WCHAP100020
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3477049..3487909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6N17_RS17490 (C6N17_17545)	secG	3477656..3477985 (-)	330	WP_002115012.1	preprotein translocase subunit SecG	-
C6N17_RS17495 (C6N17_17550)	tpiA	3477998..3478792 (-)	795	WP_002114826.1	triose-phosphate isomerase	-
C6N17_RS17500 (C6N17_17555)	pilB	3479084..3480796 (+)	1713	WP_005804145.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C6N17_RS17505 (C6N17_17560)	pilC	3480823..3482049 (+)	1227	WP_002114869.1	type II secretion system F family protein	Machinery gene
C6N17_RS17510 (C6N17_17565)	pilD	3482049..3482909 (+)	861	WP_002114758.1	prepilin peptidase	Machinery gene
C6N17_RS17515 (C6N17_17570)	coaE	3482911..3483507 (+)	597	WP_002115011.1	dephospho-CoA kinase	-
C6N17_RS17520 (C6N17_17575)	-	3483504..3484418 (-)	915	WP_019768057.1	DMT family transporter	-
C6N17_RS17525 (C6N17_17580)	rlmB	3484454..3485203 (-)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
C6N17_RS17530 (C6N17_17585)	-	3485306..3485632 (-)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
C6N17_RS17535 (C6N17_17590)	-	3485709..3487018 (-)	1310	Protein_3290	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32168.70 Da
• Isoelectric Point: 7.1044

>NTDB_id=276100 C6N17_RS17510 WP_002114758.1 3482049..3482909(+) (pilD) [Acinetobacter pittii strain WCHAP100020]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=276100 C6N17_RS17510 WP_002114758.1 3482049..3482909(+) (pilD) [Acinetobacter pittii strain WCHAP100020]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATATTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGACCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	96.503	100	0.965
pilD	Acinetobacter nosocomialis M2	96.154	100	0.962
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437