Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D4K17_RS01620 Genome accession   NZ_CP032477
Coordinates   330734..331192 (-) Length   152 a.a.
NCBI ID   WP_181371979.1    Uniprot ID   -
Organism   Helicobacter pylori strain 169-C-EK8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 325734..336192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4K17_RS01605 - 326118..326909 (-) 792 WP_139521522.1 glycosyltransferase family 2 protein -
  D4K17_RS01610 tlpB 326941..328638 (-) 1698 WP_139521524.1 methyl-accepting chemotaxis protein TlpB -
  D4K17_RS01615 - 328844..330544 (-) 1701 WP_338400337.1 5'-nucleotidase C-terminal domain-containing protein -
  D4K17_RS01620 luxS 330734..331192 (-) 459 WP_181371979.1 S-ribosylhomocysteine lyase Regulator
  D4K17_RS01625 - 331230..332372 (-) 1143 WP_139521528.1 cystathionine gamma-synthase -
  D4K17_RS01630 - 332398..333315 (-) 918 WP_201737399.1 O-acetylserine-dependent cystathionine beta-synthase -
  D4K17_RS01635 - 333428..334007 (+) 580 Protein_305 hypothetical protein -
  D4K17_RS01640 dnaK 334250..336112 (-) 1863 WP_000520988.1 molecular chaperone DnaK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17354.76 Da        Isoelectric Point: 6.6035

>NTDB_id=276098 D4K17_RS01620 WP_181371979.1 330734..331192(-) (luxS) [Helicobacter pylori strain 169-C-EK8]
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNQDHMDMPSLHSLEHLVAEIIRNHANYVVDWSPMGC
QTGFYLTVLNHDNYTEVLEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAKNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=276098 D4K17_RS01620 WP_181371979.1 330734..331192(-) (luxS) [Helicobacter pylori strain 169-C-EK8]
ATGAAAATGAATGTAGAGAGTTTCAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGCATCGCCGATCGCAAAAA
GGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCTTCAAGCAGCCCAACCAAGATCACATGGACATGCCTAGCC
TGCATTCTTTAGAGCATTTAGTCGCTGAGATCATCCGCAACCATGCTAATTATGTCGTGGATTGGTCGCCTATGGGTTGC
CAAACGGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGGTTTTAGAGGTTTTAGAAAAGACGATGCAAGA
TGTGCTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGCGGTTGGGCGGCTAACCACACTTTAGAGGGTGCCA
AGAATTTAGCGCGCGCTTTTTTAGACAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.553

92.763

0.395

Multiple sequence alignment