Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   MEMAR_RS09885 Genome accession   NC_009051
Coordinates   1989146..1991521 (-) Length   791 a.a.
NCBI ID   WP_011844838.1    Uniprot ID   A3CX29
Organism   Methanoculleus marisnigri JR1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1984146..1996521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEMAR_RS09865 (Memar_1999) - 1985036..1986514 (+) 1479 WP_011844834.1 cobyric acid synthase -
  MEMAR_RS09870 (Memar_2000) - 1986521..1987102 (+) 582 WP_011844835.1 GrpB family protein -
  MEMAR_RS09875 (Memar_2001) epdK 1987175..1988224 (-) 1050 WP_011844836.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09880 (Memar_2002) epdJ 1988226..1989149 (-) 924 WP_011844837.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09885 (Memar_2003) epdL 1989146..1991521 (-) 2376 WP_011844838.1 type II/IV secretion system ATPase subunit Machinery gene
  MEMAR_RS09890 (Memar_2004) - 1991622..1992260 (-) 639 WP_011844839.1 hypothetical protein -
  MEMAR_RS09895 (Memar_2005) - 1992632..1993438 (+) 807 WP_011844840.1 A24 family peptidase C-terminal domain-containing protein -
  MEMAR_RS09900 (Memar_2006) hisI 1993445..1993810 (+) 366 WP_011844841.1 phosphoribosyl-AMP cyclohydrolase -
  MEMAR_RS09905 (Memar_2007) - 1993834..1995729 (+) 1896 WP_011844842.1 PINc/VapC family ATPase -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88002.23 Da        Isoelectric Point: 4.6156

>NTDB_id=27586 MEMAR_RS09885 WP_011844838.1 1989146..1991521(-) (epdL) [Methanoculleus marisnigri JR1]
MGLPFQSPEEDVREETVPEEVAEPVTDDMNEQPEPSPVQEQKSAEIPQKSGGIRSLIDTVARSGDTAAPRAAGSRDPVRA
LLDRIGRGKGGSAEEVVSTPMVETHDLHAEPKMPGDPPAAVEDFGAEQDVPASSPGNHTPAGILDRVKGWSEGDESGTPK
PKPRVVGDVDDPGIGGDLSDGVVTVEELGNLADLILPKSATFTIDELSINRNEHHFDFVDNARVVSEFDDIFSQSLSSTS
LAAAAAQVVTPAEEVPQPRFGFLKKIQVPKVGAVVEEYNPAFHGQLVELTMRPSPGVEEIELYPVNEPYAYVRVTYDSTT
HEYTYNVIEPVLTPGEEQLFSEIKERLFETLNITSRDLTRDEARTALREAANMIIADYGIRLEPLGREKILYHVEKEFLG
DGLIDPVMHDKYIEDISCDGVDSAIFVYHTTYESMKTSLVYHDAVSLDSFVTKLAQRAGKYISIAEPMLDATMSDGSRIQ
MTLGAEVTAHGSTFTIRKFREEPITPTDLIEWHTFSPLGIAFIWLAVENAKSCIFAGGTASGKTTTLNAVSLFIPPLAKI
VTLEDTRELKLPHPNWIPSITRDSFSQDGRGEIDMYELLRAALRQRPEYILVGEVRGKEALTLFQAMSTGHVTYATMHAD
SVASAVHRLENPPIDVPRNMLSALNLMSIQVQARIGGQRIRRNKQLIEILDIDPRTNELITNEVFRWHPATDEIRYSGKS
YILEQIMEDRGWSEERMREELKRRQEVLEWMRIKKIRHFKDVSKILVSYFRDPETVVQRVRADLYGEGGSA

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=27586 MEMAR_RS09885 WP_011844838.1 1989146..1991521(-) (epdL) [Methanoculleus marisnigri JR1]
ATGGGTTTGCCGTTCCAGTCCCCGGAAGAGGATGTGCGGGAAGAGACGGTTCCGGAGGAGGTTGCAGAGCCCGTTACCGA
TGATATGAACGAGCAGCCGGAGCCTTCGCCAGTGCAGGAGCAGAAGAGCGCGGAGATCCCGCAAAAGAGCGGGGGGATCC
GTTCGCTCATCGACACGGTGGCGAGGTCGGGCGACACCGCCGCACCGCGTGCAGCCGGCAGCAGAGATCCGGTCAGGGCG
CTCCTCGACCGGATCGGTCGGGGCAAGGGGGGCAGCGCCGAAGAGGTCGTGTCCACCCCGATGGTAGAGACACACGATCT
CCATGCGGAGCCGAAGATGCCGGGCGATCCGCCGGCGGCGGTTGAGGATTTCGGGGCGGAGCAGGATGTGCCGGCTTCTT
CCCCCGGGAACCATACCCCTGCGGGAATCCTCGATCGGGTGAAAGGGTGGAGTGAGGGTGATGAATCCGGCACCCCCAAA
CCGAAACCCCGCGTTGTGGGAGACGTCGATGATCCCGGAATCGGAGGAGATCTATCCGACGGCGTGGTAACGGTAGAGGA
GCTCGGGAACCTGGCGGATCTGATCCTCCCGAAGAGCGCGACGTTCACGATCGATGAACTGAGCATCAACCGCAATGAGC
ACCATTTTGATTTCGTCGACAATGCCAGGGTCGTGTCGGAGTTCGACGATATCTTCTCCCAGTCCCTCTCCTCCACTTCA
CTTGCTGCGGCTGCCGCACAGGTGGTGACCCCCGCCGAAGAAGTTCCGCAGCCCCGGTTCGGATTCCTCAAAAAGATCCA
GGTGCCGAAAGTCGGCGCCGTGGTCGAGGAGTACAACCCTGCGTTCCACGGTCAGCTCGTCGAGCTCACGATGCGACCGT
CACCGGGGGTGGAGGAGATCGAGCTCTACCCGGTGAACGAACCGTATGCCTATGTCCGGGTGACCTACGACAGCACGACG
CACGAGTACACCTATAACGTCATCGAGCCCGTGCTCACGCCCGGGGAGGAGCAACTCTTTTCGGAGATCAAAGAGCGGCT
CTTTGAGACGCTCAACATTACTTCCCGTGACCTCACCCGTGACGAAGCGAGGACAGCGCTCCGCGAAGCGGCGAACATGA
TCATCGCCGACTACGGAATCCGCCTCGAGCCTCTCGGGCGGGAGAAGATTCTCTATCACGTTGAGAAGGAGTTCCTCGGC
GACGGGCTGATCGACCCGGTGATGCACGACAAGTACATCGAGGATATCTCCTGCGACGGCGTGGACAGTGCCATATTCGT
CTATCACACGACCTACGAATCGATGAAGACGAGCCTCGTCTATCACGACGCCGTGAGTCTCGACTCGTTCGTCACGAAAC
TTGCGCAGCGGGCCGGGAAATACATCTCGATCGCCGAGCCGATGCTGGATGCCACGATGAGCGACGGATCGCGTATCCAG
ATGACGCTCGGGGCGGAAGTGACCGCTCACGGTTCGACGTTCACGATCCGTAAGTTCCGGGAGGAGCCGATCACGCCGAC
AGATCTTATCGAGTGGCACACCTTCTCGCCGCTTGGGATCGCCTTCATCTGGCTCGCGGTCGAGAACGCCAAGTCCTGCA
TCTTTGCCGGCGGGACGGCGTCCGGAAAGACGACGACCCTGAACGCCGTATCGCTCTTCATCCCGCCGCTGGCAAAGATT
GTCACCCTCGAGGATACCCGGGAACTGAAACTGCCTCACCCGAACTGGATCCCGAGCATCACCCGGGACTCGTTCTCGCA
GGACGGGCGCGGCGAGATCGATATGTACGAACTCCTGCGTGCTGCGCTCCGGCAGCGTCCGGAGTACATCCTGGTCGGTG
AGGTCCGTGGCAAGGAGGCCCTGACCCTCTTCCAGGCGATGAGCACCGGTCACGTCACCTACGCGACGATGCACGCCGAC
TCGGTGGCAAGCGCCGTCCACCGTCTGGAGAACCCGCCGATAGACGTGCCGAGGAACATGCTCTCTGCACTGAACCTGAT
GTCCATCCAGGTGCAGGCCCGTATAGGCGGTCAGCGGATCCGGCGGAACAAGCAGCTCATCGAGATCCTGGATATCGATC
CCCGGACGAACGAACTGATCACGAACGAGGTCTTCCGGTGGCATCCGGCAACCGACGAGATCCGGTATTCCGGCAAATCC
TACATCCTCGAACAGATCATGGAAGACCGGGGCTGGAGCGAGGAGCGGATGCGTGAAGAGCTGAAACGCCGGCAGGAAGT
CCTTGAATGGATGCGTATCAAGAAGATTCGCCATTTCAAGGACGTGAGCAAGATCCTGGTCTCCTACTTCCGCGATCCGG
AGACGGTCGTTCAGCGGGTGCGTGCCGACCTCTACGGGGAGGGTGGTTCCGCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(410-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CX29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

77.913

93.3

0.727

Multiple sequence alignment