Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   MEMAR_RS09875 Genome accession   NC_009051
Coordinates   1987175..1988224 (-) Length   349 a.a.
NCBI ID   WP_011844836.1    Uniprot ID   A0AAX3EDE7
Organism   Methanoculleus marisnigri JR1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982175..1993224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEMAR_RS09845 (Memar_1995) - 1982250..1982510 (+) 261 WP_011844830.1 hypothetical protein -
  MEMAR_RS09850 (Memar_1996) - 1982517..1982852 (-) 336 WP_011844831.1 hypothetical protein -
  MEMAR_RS09855 (Memar_1997) yciH 1982981..1983286 (-) 306 WP_011844832.1 stress response translation initiation inhibitor YciH -
  MEMAR_RS09860 (Memar_1998) - 1983330..1984976 (-) 1647 WP_011844833.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  MEMAR_RS09865 (Memar_1999) - 1985036..1986514 (+) 1479 WP_011844834.1 cobyric acid synthase -
  MEMAR_RS09870 (Memar_2000) - 1986521..1987102 (+) 582 WP_011844835.1 GrpB family protein -
  MEMAR_RS09875 (Memar_2001) epdK 1987175..1988224 (-) 1050 WP_011844836.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09880 (Memar_2002) epdJ 1988226..1989149 (-) 924 WP_011844837.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09885 (Memar_2003) epdL 1989146..1991521 (-) 2376 WP_011844838.1 type II/IV secretion system ATPase subunit Machinery gene
  MEMAR_RS09890 (Memar_2004) - 1991622..1992260 (-) 639 WP_011844839.1 hypothetical protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38910.08 Da        Isoelectric Point: 4.9317

>NTDB_id=27584 MEMAR_RS09875 WP_011844836.1 1987175..1988224(-) (epdK) [Methanoculleus marisnigri JR1]
MGFKDLFNDFLNRRPSDQERIPEDTPDADRFVEQDQEIFGRIENWQKYQEGFYRFLKHPFRVMMEEPYTVLFVSVPVALL
LFIGGFVSMVTSYGIGALFTTTMIDDVFVFALLIAIVPLGLLDFKEAWRVSSVEASLPNFFRDVAGMNDSGMTLPHAIHI
VSEGEYGALTPHIRKLDTEMSWGVPFVEAIRRFGKTVNTPLAERSVDLIAHASSAGGDVSEVLRAAAHDAYEFFNLKTER
KNGMMIYMIIILMSFFVFLFVIGVLSGTFLTTMAEAGEAVSASGSSSAQSFMGNVDLFLYNRIFCHSALIQGFFSGLAAG
IMGEGRVVGGLKYSALMVMIAWIAFRFII

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=27584 MEMAR_RS09875 WP_011844836.1 1987175..1988224(-) (epdK) [Methanoculleus marisnigri JR1]
ATGGGATTTAAAGATCTTTTCAATGATTTCTTGAACAGGAGACCTTCGGATCAGGAGAGGATCCCGGAGGATACTCCGGA
TGCCGACCGGTTCGTGGAGCAGGACCAGGAGATCTTCGGCAGGATTGAGAACTGGCAGAAGTACCAGGAAGGGTTTTACC
GGTTCCTCAAACACCCGTTCAGGGTGATGATGGAGGAGCCCTACACCGTCCTCTTCGTATCCGTCCCGGTTGCGCTGCTC
CTCTTTATCGGCGGGTTCGTGAGCATGGTGACGTCCTACGGCATCGGCGCCCTCTTCACGACGACGATGATCGACGACGT
CTTCGTCTTCGCGCTCCTCATTGCCATCGTGCCGCTTGGCCTTCTCGATTTCAAGGAGGCGTGGCGCGTATCGAGCGTCG
AGGCGTCCCTTCCGAACTTTTTCCGGGACGTGGCCGGGATGAACGATTCAGGTATGACGCTCCCGCATGCCATTCATATC
GTCTCGGAGGGCGAATACGGGGCGCTCACACCGCACATCCGCAAACTCGACACCGAGATGTCCTGGGGTGTCCCGTTCGT
GGAGGCCATCCGCCGGTTCGGAAAGACCGTGAATACCCCGCTCGCGGAGCGGAGCGTCGACCTGATCGCCCACGCGAGCT
CCGCCGGCGGTGACGTGAGCGAGGTGCTGCGGGCGGCGGCACACGATGCTTACGAGTTCTTCAACTTAAAGACGGAGCGC
AAAAACGGGATGATGATCTACATGATCATCATCCTGATGTCGTTCTTCGTCTTCCTCTTCGTCATCGGGGTGCTTTCGGG
CACCTTCCTCACCACGATGGCGGAGGCGGGGGAGGCGGTCTCTGCGTCGGGCTCGAGTTCGGCCCAGTCGTTCATGGGCA
ACGTGGACCTCTTCCTCTACAACCGGATCTTCTGTCACTCCGCGCTGATTCAGGGATTCTTCTCGGGGCTGGCGGCGGGC
ATCATGGGCGAAGGCCGGGTGGTCGGTGGGCTGAAGTACTCGGCGCTGATGGTCATGATCGCCTGGATCGCGTTCCGGTT
CATCATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(140-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

80.682

100

0.814

Multiple sequence alignment