Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   MEMAR_RS09880 Genome accession   NC_009051
Coordinates   1988226..1989149 (-) Length   307 a.a.
NCBI ID   WP_011844837.1    Uniprot ID   A0AAX3EAZ9
Organism   Methanoculleus marisnigri JR1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1983226..1994149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MEMAR_RS09860 (Memar_1998) - 1983330..1984976 (-) 1647 WP_011844833.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase -
  MEMAR_RS09865 (Memar_1999) - 1985036..1986514 (+) 1479 WP_011844834.1 cobyric acid synthase -
  MEMAR_RS09870 (Memar_2000) - 1986521..1987102 (+) 582 WP_011844835.1 GrpB family protein -
  MEMAR_RS09875 (Memar_2001) epdK 1987175..1988224 (-) 1050 WP_011844836.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09880 (Memar_2002) epdJ 1988226..1989149 (-) 924 WP_011844837.1 type II secretion system F family protein Machinery gene
  MEMAR_RS09885 (Memar_2003) epdL 1989146..1991521 (-) 2376 WP_011844838.1 type II/IV secretion system ATPase subunit Machinery gene
  MEMAR_RS09890 (Memar_2004) - 1991622..1992260 (-) 639 WP_011844839.1 hypothetical protein -
  MEMAR_RS09895 (Memar_2005) - 1992632..1993438 (+) 807 WP_011844840.1 A24 family peptidase C-terminal domain-containing protein -
  MEMAR_RS09900 (Memar_2006) hisI 1993445..1993810 (+) 366 WP_011844841.1 phosphoribosyl-AMP cyclohydrolase -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34033.67 Da        Isoelectric Point: 5.8490

>NTDB_id=27585 MEMAR_RS09880 WP_011844837.1 1988226..1989149(-) (epdJ) [Methanoculleus marisnigri JR1]
MNSYERFCFNLIGHGLKKKRGDYISLRNDLMGARMNTPFEAYLATAYVSSVAVGLAAAALLGLLAYLLRIPDMIVYRGAV
PEVLYALNDYKMLLGTVAITVISLLVFGGITYLIYLLYPGIKAGERRRNIDATLPYAINYVTAMSSAGITPDEVFRLLGQ
STIYGESAVEARYISRETDFFGKDLLDALRTVSQATPSERMREFLQGAVASISSGSNLTEYFRNKAHQYTLENNQQQKSF
LETLGLIAESYVTAMVAGMLFLIILQSVMTILSGDSDPFFLYVIIYMIVPFGSMMFVVLISSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=27585 MEMAR_RS09880 WP_011844837.1 1988226..1989149(-) (epdJ) [Methanoculleus marisnigri JR1]
ATGAACAGTTACGAGCGGTTCTGCTTCAACCTGATCGGGCACGGCCTGAAAAAGAAGCGGGGAGACTACATCAGCCTCCG
AAACGACCTGATGGGAGCCCGGATGAATACGCCGTTCGAGGCGTATCTTGCGACCGCTTACGTTTCCTCGGTCGCCGTGG
GGCTGGCCGCCGCCGCGCTCCTCGGGCTCCTGGCCTACCTCCTGCGGATTCCCGATATGATCGTCTATCGCGGAGCGGTT
CCGGAAGTCCTGTATGCGTTGAACGACTACAAGATGCTGCTCGGCACCGTTGCCATCACGGTCATTTCTCTCCTGGTGTT
CGGGGGGATAACCTACCTGATCTACCTCCTCTATCCGGGTATAAAGGCAGGAGAACGTCGCCGGAATATCGATGCCACCC
TCCCGTATGCCATTAACTACGTCACCGCCATGTCTTCGGCCGGGATCACCCCCGACGAGGTCTTCCGGCTGCTCGGCCAG
AGCACGATATACGGGGAAAGCGCCGTCGAAGCGCGCTACATCTCCCGGGAAACCGATTTCTTCGGGAAGGATCTTCTCGA
TGCCCTGCGGACGGTCTCGCAGGCGACGCCGAGCGAACGGATGCGGGAGTTCCTGCAGGGAGCCGTTGCGAGCATCTCCA
GCGGGAGCAACCTCACGGAGTACTTCCGCAACAAGGCTCACCAGTACACGCTCGAGAACAACCAGCAGCAGAAGTCGTTT
TTAGAGACGCTCGGGCTGATCGCGGAGTCCTACGTCACCGCGATGGTCGCCGGCATGCTCTTTCTGATCATCCTGCAGTC
GGTGATGACGATCCTCTCGGGCGACTCGGATCCGTTCTTCCTCTACGTCATCATCTACATGATTGTGCCGTTCGGGAGCA
TGATGTTCGTCGTCCTGATCAGTTCCATGACTCCGGAGGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

87.622

100

0.876

Multiple sequence alignment