Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | C2E19_RS25340 | Genome accession | NZ_CP027218 |
| Coordinates | 5524045..5525391 (+) | Length | 448 a.a. |
| NCBI ID | WP_129395566.1 | Uniprot ID | A0A481QZP6 |
| Organism | Pseudomonas sp. DTU12.3 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5519045..5530391
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2E19_RS25315 (C2E19_25355) | pgeF | 5519254..5519976 (-) | 723 | WP_129395563.1 | peptidoglycan editing factor PgeF | - |
| C2E19_RS25320 (C2E19_25360) | rluD | 5519973..5520935 (-) | 963 | WP_122592797.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| C2E19_RS25325 (C2E19_25365) | - | 5521087..5522103 (+) | 1017 | WP_129395564.1 | outer membrane protein assembly factor BamD | - |
| C2E19_RS25330 (C2E19_25370) | - | 5522230..5522469 (+) | 240 | WP_129395565.1 | PP0621 family protein | - |
| C2E19_RS25335 (C2E19_25375) | pilS | 5522459..5524048 (+) | 1590 | WP_129396177.1 | PAS domain-containing sensor histidine kinase | Regulator |
| C2E19_RS25340 (C2E19_25380) | pilR | 5524045..5525391 (+) | 1347 | WP_129395566.1 | sigma-54 dependent transcriptional regulator | Regulator |
| C2E19_RS25345 (C2E19_25385) | thiO | 5525481..5526581 (-) | 1101 | WP_129395567.1 | glycine oxidase ThiO | - |
| C2E19_RS25350 (C2E19_25390) | - | 5526639..5527040 (-) | 402 | WP_129395568.1 | type IV pilin protein | - |
| C2E19_RS25355 (C2E19_25395) | - | 5527056..5530139 (-) | 3084 | WP_129395569.1 | pilus assembly protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50180.57 Da Isoelectric Point: 6.9068
>NTDB_id=275805 C2E19_RS25340 WP_129395566.1 5524045..5525391(+) (pilR) [Pseudomonas sp. DTU12.3]
MTNSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLHRERFDLCLTDMRLPDGTGLDLVLHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAASAASTSIDRRLLGDSLPMRDLRKQIDKLARSQA
PVYISGESGSGKERVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPVARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRVIESADLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD
MTNSPRQKILIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLHRERFDLCLTDMRLPDGTGLDLVLHIQQRYPQLP
VAMITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVGTALRMPAASAASTSIDRRLLGDSLPMRDLRKQIDKLARSQA
PVYISGESGSGKERVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAANGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEVLA
AHMLKRLAKDTGQPVARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRVIESADLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=275805 C2E19_RS25340 WP_129395566.1 5524045..5525391(+) (pilR) [Pseudomonas sp. DTU12.3]
TTGACTAACAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCCGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCGCGTAATCTCGGCGAAGCCCAAGCGTTGTTGCACCGCGAGCGCTTTGACCTGT
GCCTGACCGACATGCGTCTACCCGACGGCACGGGGCTGGATCTGGTGCTGCACATCCAGCAGCGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCAATCAATGCACTGAAGGCCGGCGCCTTTGACTTTCTGACCAA
ACCGGTTGACCTCACCCGCTTGCGCGAACTGGTCGGCACAGCCCTGCGCATGCCGGCCGCGAGCGCTGCAAGCACTTCAA
TCGATCGACGCCTGCTCGGTGATTCGTTACCGATGCGCGACCTGCGCAAGCAGATCGACAAGCTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAGGAGCGGGTCGCGCGCCTGATTCATGAGCAAGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGGGCGATTCCGTCCGAGCTGATGGAAAGCGAATTCTTTGGCCATCGCAAAGGCA
GTTTCACCGGCGCCGTCGAGGACAAGCCGGGGCTGTTCCAGGCGGCGAACGGCGGCACCTTGTTTCTCGACGAAGTGGCG
GACTTGCCGCTGTCGATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGTGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGTGCAACCCACAAGGACCTTGATGCCGAGGTCGCTGCCGAGCGTTTCCGCCAGG
ACCTTTATTACCGGCTCAACGTTATCGAACTGCGCGTGCCATCACTGCGCGAGCGGCGTGACGACATTGAAGTGCTCGCG
GCGCACATGCTCAAGCGTTTGGCCAAAGACACCGGCCAACCGGTGGCGCGGCTGCATCCGCAGGCGCTGGAAGCACTGAA
GAACTACCGTTTTCCGGGCAATGTGCGGGAGCTGGAGAACGTGCTCGAACGCGCGCACACCTTGTGTGAGAACCGCGTGA
TCGAGTCTGCAGACTTGCGCTTGAGCGAAGGCAATTGCGCGGCTGAAGGAGGGATTGCCGACCTGACACAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGCAAACTGATCTTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGCTTGAGCCTGTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTAG
TTGACTAACAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAGCCCGACATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAGCTCGACACCTACAGCGCGCGTAATCTCGGCGAAGCCCAAGCGTTGTTGCACCGCGAGCGCTTTGACCTGT
GCCTGACCGACATGCGTCTACCCGACGGCACGGGGCTGGATCTGGTGCTGCACATCCAGCAGCGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCAATCAATGCACTGAAGGCCGGCGCCTTTGACTTTCTGACCAA
ACCGGTTGACCTCACCCGCTTGCGCGAACTGGTCGGCACAGCCCTGCGCATGCCGGCCGCGAGCGCTGCAAGCACTTCAA
TCGATCGACGCCTGCTCGGTGATTCGTTACCGATGCGCGACCTGCGCAAGCAGATCGACAAGCTCGCCCGCAGCCAGGCG
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAGGAGCGGGTCGCGCGCCTGATTCATGAGCAAGGGCCGCGCGCCAG
CCAGCCGTTCGTACCGGTGAACTGCGGGGCGATTCCGTCCGAGCTGATGGAAAGCGAATTCTTTGGCCATCGCAAAGGCA
GTTTCACCGGCGCCGTCGAGGACAAGCCGGGGCTGTTCCAGGCGGCGAACGGCGGCACCTTGTTTCTCGACGAAGTGGCG
GACTTGCCGCTGTCGATGCAGGTAAAACTGCTGCGGGCGATTCAGGAAAAAGCCGTGCGCAGCGTCGGTGGTCAGCAGGA
AACCGTGGTCGATGTGCGCATTCTCTGTGCAACCCACAAGGACCTTGATGCCGAGGTCGCTGCCGAGCGTTTCCGCCAGG
ACCTTTATTACCGGCTCAACGTTATCGAACTGCGCGTGCCATCACTGCGCGAGCGGCGTGACGACATTGAAGTGCTCGCG
GCGCACATGCTCAAGCGTTTGGCCAAAGACACCGGCCAACCGGTGGCGCGGCTGCATCCGCAGGCGCTGGAAGCACTGAA
GAACTACCGTTTTCCGGGCAATGTGCGGGAGCTGGAGAACGTGCTCGAACGCGCGCACACCTTGTGTGAGAACCGCGTGA
TCGAGTCTGCAGACTTGCGCTTGAGCGAAGGCAATTGCGCGGCTGAAGGAGGGATTGCCGACCTGACACAGATCGACAAT
CTGGAAGATTATCTGGAGAACGTCGAGCGCAAACTGATCTTGCAGGCGCTGGAGGAAACGCGCTGGAATCGTACGGCGGC
GGCGCAGCGCTTGAGCCTGTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAACTGGGCCTGGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.684 |
98.884 |
0.788 |
| pilR | Acinetobacter baumannii strain A118 |
49.02 |
100 |
0.502 |