Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C2E19_RS25335 Genome accession   NZ_CP027218
Coordinates   5522459..5524048 (+) Length   529 a.a.
NCBI ID   WP_129396177.1    Uniprot ID   A0A481R2L4
Organism   Pseudomonas sp. DTU12.3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5517459..5529048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E19_RS25315 (C2E19_25355) pgeF 5519254..5519976 (-) 723 WP_129395563.1 peptidoglycan editing factor PgeF -
  C2E19_RS25320 (C2E19_25360) rluD 5519973..5520935 (-) 963 WP_122592797.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C2E19_RS25325 (C2E19_25365) - 5521087..5522103 (+) 1017 WP_129395564.1 outer membrane protein assembly factor BamD -
  C2E19_RS25330 (C2E19_25370) - 5522230..5522469 (+) 240 WP_129395565.1 PP0621 family protein -
  C2E19_RS25335 (C2E19_25375) pilS 5522459..5524048 (+) 1590 WP_129396177.1 PAS domain-containing sensor histidine kinase Regulator
  C2E19_RS25340 (C2E19_25380) pilR 5524045..5525391 (+) 1347 WP_129395566.1 sigma-54 dependent transcriptional regulator Regulator
  C2E19_RS25345 (C2E19_25385) thiO 5525481..5526581 (-) 1101 WP_129395567.1 glycine oxidase ThiO -
  C2E19_RS25350 (C2E19_25390) - 5526639..5527040 (-) 402 WP_129395568.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58484.17 Da        Isoelectric Point: 6.6915

>NTDB_id=275804 C2E19_RS25335 WP_129396177.1 5522459..5524048(+) (pilS) [Pseudomonas sp. DTU12.3]
MIAEAANADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLVLNILLVVFLENTRRPAQLF
SLALVDVLLLCGLFYAAGGVASALGNLLIVSVAISNTLLRRRIGLLIAAIGALGIVGLSFLLSFSHPLSANEYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVGLEALNALILQRMRTGILVLDEERRVQLANQSAQNLLARSHLQGHLID
AYSPALVERLQLWMNNPSLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQISQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLGESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLENFVAESREQASER
QHIHLRINSGDFATLMDPNQLTQILDNLLRNGWRHSALLHEQAEVWLALFVDPDSQLAVLEVQDNGPGVPVDEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=275804 C2E19_RS25335 WP_129396177.1 5522459..5524048(+) (pilS) [Pseudomonas sp. DTU12.3]
GTGATCGCTGAGGCCGCCAACGCCGACAGCAAACAGGCTCAGCGCCTGCTGCGCCTTTATCATCTCTACCGTTTAAGCGT
CGGCATCACTTTGGTGCTGCTGATCTCCAGCAACATGGATAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGTTATATCTGGTCCTGAACATCTTGCTGGTGGTGTTTCTCGAGAACACCCGGCGACCGGCGCAACTGTTC
AGCCTGGCCCTCGTCGATGTGCTGTTGCTATGCGGCCTGTTCTATGCGGCGGGCGGCGTGGCCAGCGCCCTCGGCAACCT
GCTGATTGTTTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATCGCCGCCATCGGCGCTCTTG
GCATCGTCGGCCTGAGTTTCCTGCTGAGTTTCAGCCACCCCCTGAGCGCCAACGAATACCTGCAAGCCGGCACGCTCGGC
GCACTGTGCTTTGCCGCATCGCTGCTGGTGCAAGGGCTGATCCGCCGTCTTGAAGTCAGCGAAACGCTGGCCGAGCAACG
GGCCAGCGAGGTGGTCGGCCTGGAGGCGTTGAACGCACTGATTCTGCAGCGCATGCGCACCGGGATTCTCGTGCTCGACG
AGGAACGTCGCGTGCAACTGGCCAACCAGAGTGCGCAGAACCTGCTCGCGCGCTCACACCTGCAAGGCCATCTGATCGAC
GCCTACTCGCCCGCACTGGTCGAACGCCTGCAACTGTGGATGAACAATCCGAGCCTGCGCCCGCAAAGCCTGAAGATTCC
CGGCAATGGCCTTGAATTGCAGCCGAGCTTCATTGCTCTCGAACAAAGCCCGAATCAGCAAACCCTGGTATTTCTCGAAG
ACCTGGCGCAAATATCCCAGCAGGCCCAGCAACTGAAACTTGCCGCACTCGGGCGCCTGACCGCCGGCATCTCTCACGAA
ATCCGCAATCCGCTCGGCGCCATCAGTCATGCCGCACAGCTATTGGGCGAATCCGAGGAACTCGACAGCGCCGACCGGCG
TCTGACGCAGATCATTCAAGATCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTTTCACGACGCCAGC
AAAGTGCCCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAAAACTTCGTCGCCGAGAGCCGCGAACAGGCCAGCGAGCGC
CAACACATTCATCTGCGGATCAACTCGGGTGACTTCGCCACACTGATGGACCCCAATCAGCTCACGCAAATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGCGCGTTACTGCACGAGCAGGCCGAGGTCTGGCTGGCATTGTTCGTCGACCCGG
ACAGCCAATTGGCGGTGCTTGAGGTGCAGGACAACGGCCCCGGCGTGCCAGTCGACGAACAGGCGCATCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAAGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603

Multiple sequence alignment