Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SPH_RS00640 Genome accession   NC_010380
Coordinates   111745..112515 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae Hungary19A-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 106745..117515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH_RS00620 (SPH_0132) - 108573..109010 (+) 438 WP_000076500.1 CoA-binding protein -
  SPH_RS13775 (SPH_0133) - 109051..109401 (+) 351 WP_000693178.1 hypothetical protein -
  SPH_RS00630 (SPH_0134) - 109420..110430 (-) 1011 WP_000009179.1 YeiH family protein -
  SPH_RS00635 (SPH_0135) - 110579..111748 (+) 1170 WP_000366376.1 pyridoxal phosphate-dependent aminotransferase -
  SPH_RS00640 (SPH_0136) recO 111745..112515 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  SPH_RS00645 (SPH_0137) plsX 112512..113504 (+) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  SPH_RS00650 (SPH_0138) - 113510..113743 (+) 234 WP_000136447.1 acyl carrier protein -
  SPH_RS00655 (SPH_0139) - 113789..114079 (+) 291 Protein_123 transposase family protein -
  SPH_RS00660 (SPH_0140) blpU 114282..114512 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  SPH_RS14155 (SPH_0141) - 114515..114640 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  SPH_RS13780 - 115048..115242 (+) 195 WP_000756776.1 hypothetical protein -
  SPH_RS00675 (SPH_0142) comR 115263..116156 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  SPH_RS00680 (SPH_0143) - 116699..116995 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=27547 SPH_RS00640 WP_000616164.1 111745..112515(+) (recO) [Streptococcus pneumoniae Hungary19A-6]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=27547 SPH_RS00640 WP_000616164.1 111745..112515(+) (recO) [Streptococcus pneumoniae Hungary19A-6]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment