Detailed information NTG0275390

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CSB93_RS32755
• Genome accession: NZ_CP027169
• Coordinates: 6570575..6571447 (+)
• Length: 290 a.a.
• NCBI ID: WP_058146767.1
• Uniprot ID: -
• Organism: Pseudomonas paraeruginosa strain AR_0356
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6565575..6576447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSB93_RS32740 (CSB93_6490)	-	6566958..6567425 (-)	468	WP_034081326.1	pilin	-
CSB93_RS32745 (CSB93_6491)	pilB	6567648..6569351 (+)	1704	WP_033998207.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CSB93_RS32750 (CSB93_6492)	pilC	6569355..6570572 (+)	1218	WP_034081324.1	type II secretion system F family protein	Machinery gene
CSB93_RS32755 (CSB93_6493)	pilD	6570575..6571447 (+)	873	WP_058146767.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
CSB93_RS32760 (CSB93_6494)	coaE	6571444..6572055 (+)	612	WP_003152767.1	dephospho-CoA kinase	-
CSB93_RS32765 (CSB93_6495)	yacG	6572052..6572252 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
CSB93_RS32770 (CSB93_6496)	-	6572290..6572499 (-)	210	WP_033998211.1	hypothetical protein	-
CSB93_RS32775 (CSB93_6497)	-	6572605..6573294 (-)	690	WP_012077298.1	energy-coupling factor ABC transporter permease	-
CSB93_RS32780 (CSB93_6498)	-	6573291..6573761 (-)	471	WP_079385052.1	FAD/FMN-containing dehydrogenase	-
CSB93_RS32785 (CSB93_6499)	-	6573758..6574183 (-)	426	WP_003152776.1	GNAT family N-acetyltransferase	-
CSB93_RS32790 (CSB93_6500)	-	6574315..6574944 (+)	630	WP_033998217.1	DUF1780 domain-containing protein	-
CSB93_RS32795 (CSB93_6501)	-	6574941..6575381 (+)	441	WP_012077299.1	MOSC domain-containing protein	-
CSB93_RS32800 (CSB93_6502)	-	6575416..6575586 (+)	171	WP_003152781.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31739.77 Da
• Isoelectric Point: 8.0434

>NTDB_id=275390 CSB93_RS32755 WP_058146767.1 6570575..6571447(+) (pilD) [Pseudomonas paraeruginosa strain AR_0356]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPVLSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AILGAIMLRLRNAASGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=275390 CSB93_RS32755 WP_058146767.1 6570575..6571447(+) (pilD) [Pseudomonas paraeruginosa strain AR_0356]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGT
CCCTGGGAAAACATCCCGGTGCTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAGCTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGACGCGCTGTTCGGCGCGGT
GTTCGGCTACCTCAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGGTCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCCATCCTCGGGGCGATCATGCTGCGCCTGCGCAACGCCGCAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCATTGCTCTGGGGTGATCAAATAACCCGGACCTATTTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.357	97.586	0.521
pilD	Acinetobacter baumannii D1279779	50.883	97.586	0.497
pilD	Acinetobacter nosocomialis M2	50.177	97.586	0.49
pilD	Neisseria gonorrhoeae MS11	50	95.862	0.479