Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SSA_RS05260 Genome accession   NC_009009
Coordinates   1084475..1086436 (+) Length   653 a.a.
NCBI ID   WP_011836902.1    Uniprot ID   A3CMS5
Organism   Streptococcus sanguinis SK36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079475..1091436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS05250 (SSA_1064) - 1080415..1081155 (-) 741 WP_011836900.1 hypothetical protein -
  SSA_RS05255 (SSA_1065) - 1081392..1084190 (+) 2799 WP_033179148.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  SSA_RS05260 (SSA_1066) amiA 1084475..1086436 (+) 1962 WP_011836902.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS05265 (SSA_1067) - 1086548..1087405 (+) 858 WP_023916164.1 GNAT family N-acetyltransferase -
  SSA_RS05270 (SSA_1068) - 1087525..1088427 (+) 903 WP_033179149.1 LysR family transcriptional regulator -
  SSA_RS05275 (SSA_1069) lspA 1088431..1088898 (+) 468 WP_002917330.1 signal peptidase II -
  SSA_RS05280 (SSA_1070) - 1088882..1089778 (+) 897 WP_002917329.1 RluA family pseudouridine synthase -
  SSA_RS05285 (SSA_1072) proB 1089895..1091004 (+) 1110 WP_011836904.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72415.03 Da        Isoelectric Point: 4.6054

>NTDB_id=27523 SSA_RS05260 WP_011836902.1 1084475..1086436(+) (amiA) [Streptococcus sanguinis SK36]
MKASKWLIATGVALSAGLLLTACSQSSSSTNNYTYVYSSDPDSLNYLATNRATTGDVISNLVDGLFENDKYGNLVPSIAK
SWTVSKDGLTYTYKLRDDAKWYTSDGEEYAEVKAQDFVTGLKYAADENSEAIYLVQDSVKGLDAYIKGEDKNFDNVGVKA
IDDHTLQYTLARPEPYWNSKTTSTILFPVNEEFLKAEGSNFGSVKPSSILYNGPYLLKSLTSKSVMEFVKNQNYYDKDNV
TLDSIKLTYYDGNDQEALIRNFSDGVYSTARLYPNSSGFASVKKKYADNIVYSPQDSTSYYYNFNYNRQSYNHTSKTTDA
QKSATNEAIMNKDFRQAINFAFDRTSYGAQGNGEDGATKVLRNTLVPPSFVQIGDKDFGTVVGEKLVNYGNQWQGIDLSD
AQDPYYNPEKAKAKFAEAKQALQAKGVEFPIHLDMPVDQSSTIGVQWASSTKQSIESALGAENVVIDLQKMSTDDLNNIT
YFANSAAQKDYDMSTGGWTGDYQDPSTYLDTLNIKNGGSLQNFGFEPGQDNDKIKELGLDTYTKMLEEANAETNDVQLRY
EKYAEAEAWLLDSGLIIPTVSQGATPSVTKSVPFTKAYSPVGVKGSAYNFKLTQLQKDVVTTKEYEAAKKKWKEEATAAN
KKAQEELADHVEK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=27523 SSA_RS05260 WP_011836902.1 1084475..1086436(+) (amiA) [Streptococcus sanguinis SK36]
ATGAAAGCATCAAAGTGGCTGATTGCGACTGGAGTCGCACTGAGTGCCGGGCTATTGCTAACGGCTTGTAGCCAGTCTTC
ATCTAGCACAAATAATTATACTTACGTTTATAGTTCAGACCCTGACAGCTTGAACTATCTTGCTACAAACCGTGCAACGA
CAGGTGATGTCATTTCCAACCTGGTCGATGGACTTTTTGAAAATGACAAGTACGGGAATCTAGTTCCCTCAATCGCGAAG
TCATGGACAGTTTCTAAGGACGGTCTGACCTATACTTATAAGCTGCGTGATGATGCTAAATGGTACACATCCGATGGTGA
AGAATATGCAGAAGTAAAAGCCCAGGACTTTGTGACTGGCTTGAAATATGCAGCGGATGAAAATTCTGAAGCTATTTATC
TCGTTCAGGACTCTGTGAAGGGCTTGGATGCTTATATCAAGGGTGAAGATAAGAATTTTGACAATGTTGGTGTCAAGGCT
ATTGACGACCATACATTGCAATACACTCTGGCTCGCCCTGAGCCATATTGGAACTCTAAAACGACCAGCACGATTCTTTT
CCCAGTCAATGAAGAGTTTCTGAAAGCAGAAGGAAGCAATTTTGGCTCTGTCAAGCCATCTAGCATCCTCTACAATGGTC
CTTACTTGCTCAAGTCGCTGACTTCCAAGTCTGTGATGGAATTTGTCAAGAACCAAAACTACTACGATAAAGATAATGTG
ACTCTAGATAGCATCAAGCTAACCTATTATGATGGAAATGATCAGGAAGCGTTGATTCGTAACTTTAGCGATGGCGTTTA
TAGCACAGCTCGTCTCTATCCAAATAGCTCAGGCTTTGCTTCAGTCAAGAAGAAATACGCGGACAATATCGTTTACAGCC
CGCAGGATTCTACTTCTTATTACTATAATTTTAACTACAACCGTCAGTCTTACAATCATACTTCTAAAACAACAGACGCT
CAAAAATCTGCGACCAACGAAGCAATCATGAACAAGGACTTCCGTCAGGCTATTAACTTTGCCTTTGACCGTACATCTTA
TGGTGCGCAAGGAAATGGTGAAGACGGAGCGACTAAGGTCTTGAGAAATACATTGGTACCACCTAGCTTTGTCCAAATTG
GCGACAAGGATTTTGGAACTGTTGTTGGAGAAAAATTAGTCAACTATGGCAACCAATGGCAAGGAATTGACCTCTCTGAC
GCTCAAGATCCTTACTACAATCCTGAAAAAGCTAAGGCGAAATTTGCAGAAGCGAAGCAAGCCTTGCAGGCTAAGGGAGT
TGAATTCCCAATTCACTTAGATATGCCTGTGGATCAGTCTAGCACCATTGGCGTTCAATGGGCTAGCTCAACCAAGCAGT
CTATCGAATCGGCTCTTGGAGCGGAAAATGTCGTCATTGACCTGCAAAAGATGAGCACAGACGATCTTAATAACATCACC
TATTTTGCTAACTCTGCTGCTCAGAAAGACTATGATATGTCTACTGGTGGTTGGACTGGTGACTACCAAGACCCATCTAC
CTATCTTGATACTCTCAATATCAAGAACGGCGGAAGCTTGCAAAACTTTGGTTTTGAGCCAGGTCAAGACAATGATAAGA
TTAAAGAGCTAGGCTTGGATACTTATACCAAGATGCTGGAAGAAGCCAATGCTGAAACCAACGATGTGCAGCTGCGTTAC
GAAAAGTATGCAGAAGCGGAAGCTTGGTTGCTAGATAGCGGCTTGATTATTCCGACTGTTTCACAAGGAGCAACACCGTC
TGTTACTAAATCAGTGCCATTTACGAAGGCCTACTCACCAGTTGGTGTCAAAGGTTCAGCTTACAACTTCAAGCTGACCC
AGCTTCAGAAGGATGTTGTAACGACCAAAGAATACGAAGCAGCTAAGAAAAAATGGAAAGAAGAAGCTACTGCGGCAAAT
AAAAAAGCCCAGGAAGAACTTGCTGACCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CMS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.64

100

0.559
  amiA3 Streptococcus thermophilus LMD-9

55.251

100

0.556
  amiA3 Streptococcus thermophilus LMG 18311

55.099

100

0.554

Multiple sequence alignment