Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C5695_RS20230 Genome accession   NZ_CP027116
Coordinates   3920101..3920646 (-) Length   181 a.a.
NCBI ID   WP_003215157.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3915101..3925646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS20205 (C5695_20275) - 3915374..3915982 (-) 609 WP_117732915.1 alpha/beta hydrolase -
  C5695_RS20210 (C5695_20280) - 3915979..3916950 (-) 972 WP_233230769.1 ring-cleaving dioxygenase -
  C5695_RS20215 (C5695_20285) - 3917143..3918660 (-) 1518 WP_117732919.1 ABC transporter permease/substrate-binding protein -
  C5695_RS20220 (C5695_20290) - 3918653..3919618 (-) 966 WP_117732921.1 ABC transporter ATP-binding protein -
  C5695_RS20225 (C5695_20295) rpsR 3919821..3920060 (-) 240 WP_008347556.1 30S ribosomal protein S18 -
  C5695_RS20230 (C5695_20300) ssbA 3920101..3920646 (-) 546 WP_003215157.1 single-stranded DNA-binding protein SsbA Machinery gene
  C5695_RS20235 (C5695_20305) rpsF 3920683..3920970 (-) 288 WP_003215073.1 30S ribosomal protein S6 -
  C5695_RS20240 (C5695_20310) ychF 3921079..3922179 (-) 1101 WP_117732923.1 redox-regulated ATPase YchF -
  C5695_RS20245 (C5695_20315) - 3922397..3922603 (-) 207 WP_012011910.1 DUF951 domain-containing protein -
  C5695_RS20250 (C5695_20320) - 3922898..3924217 (+) 1320 WP_117732925.1 hydrolase -
  C5695_RS20255 (C5695_20325) - 3924233..3924643 (+) 411 WP_117732927.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19706.26 Da        Isoelectric Point: 4.6109

>NTDB_id=275083 C5695_RS20230 WP_003215157.1 3920101..3920646(-) (ssbA) [Bacillus pumilus strain 145]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKSGGAGSGGYSGGGNSGGQYYGGSQNDQNPFGNEPSQNPYGNQSNQQNRNQGNSF
NDDPFANDGKPIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=275083 C5695_RS20230 WP_003215157.1 3920101..3920646(-) (ssbA) [Bacillus pumilus strain 145]
ATGCTAAACCGTGTTGTATTGGTCGGAAGACTAACAAAAGACCCTGAGCTTCGCTACACGCCTAATGGTGCGGCTGTAGC
CACGTTTACTCTAGCTGTGAATCGTACGTTTACGAATCAATCTGGAGAGCGTGAAGCCGATTTCATTAACTGTGTTACTT
GGAGAAGACAAGCCGAGAACGTGGCTAATTTCTTGAAAAAAGGAAGTCTTGCCGGTGTAGACGGTCGTTTGCAGACAAGA
AACTATGAAAATCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTTCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAGAG
CGGCGGTGCTGGTTCAGGTGGATACAGCGGCGGTGGTAATAGCGGAGGCCAGTATTATGGCGGTAGCCAAAACGATCAGA
ATCCATTCGGAAATGAACCAAGTCAAAATCCATATGGCAATCAAAGCAACCAACAAAATCGTAATCAGGGAAATAGCTTT
AATGATGACCCATTTGCGAATGATGGTAAACCGATTGACATCTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.53

100

0.845
  ssb Latilactobacillus sakei subsp. sakei 23K

55.08

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

58.564

0.376

Multiple sequence alignment