Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C5695_RS15850 Genome accession   NZ_CP027116
Coordinates   3039648..3040289 (-) Length   213 a.a.
NCBI ID   WP_117731528.1    Uniprot ID   A0AAD2JCR7
Organism   Bacillus pumilus strain 145     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3034648..3045289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS15815 (C5695_15885) - 3035769..3036200 (+) 432 WP_106043633.1 Na(+)/H(+) antiporter subunit B -
  C5695_RS15820 (C5695_15890) - 3036200..3036541 (+) 342 WP_117731522.1 Na(+)/H(+) antiporter subunit C -
  C5695_RS15825 (C5695_15895) - 3036534..3038012 (+) 1479 WP_148959753.1 Na+/H+ antiporter subunit D -
  C5695_RS15830 (C5695_15900) - 3038019..3038498 (+) 480 WP_117731524.1 Na+/H+ antiporter subunit E -
  C5695_RS15835 (C5695_15905) - 3038495..3038779 (+) 285 WP_233230872.1 Na(+)/H(+) antiporter subunit F1 -
  C5695_RS15840 (C5695_15910) mnhG 3038763..3039137 (+) 375 WP_117731526.1 monovalent cation/H(+) antiporter subunit G -
  C5695_RS15845 (C5695_15915) - 3039235..3039624 (-) 390 WP_117731527.1 hotdog fold thioesterase -
  C5695_RS15850 (C5695_15920) comA 3039648..3040289 (-) 642 WP_117731528.1 response regulator transcription factor Regulator
  C5695_RS15855 (C5695_15925) comP 3040370..3042682 (-) 2313 WP_117731529.1 ATP-binding protein Regulator
  C5695_RS15860 (C5695_15930) comX 3042736..3042906 (-) 171 WP_117731530.1 competence pheromone ComX -
  C5695_RS15865 (C5695_15935) - 3042903..3043817 (-) 915 WP_117731531.1 polyprenyl synthetase family protein -
  C5695_RS15870 (C5695_15940) degQ 3043969..3044109 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  C5695_RS15875 (C5695_15945) - 3044615..3044968 (+) 354 WP_117731532.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.57 Da        Isoelectric Point: 4.6354

>NTDB_id=275071 C5695_RS15850 WP_117731528.1 3039648..3040289(-) (comA) [Bacillus pumilus strain 145]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQKVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=275071 C5695_RS15850 WP_117731528.1 3039648..3040289(-) (comA) [Bacillus pumilus strain 145]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATTTTAGAAACGAACCAGAAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCCATTAGTAAAACAGA
GACAAAGGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAACAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGATCTGTTAACAGAGCGGGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATATACGAACCAAGAGATTGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATATAG
TTTGACGTCCATCTTTAATAAGCTGAATGTAGGATCACGAACTGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723

Multiple sequence alignment