Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AM340_RS08955 Genome accession   NZ_CP032204
Coordinates   1805785..1806417 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain AR_0013     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800785..1811417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM340_RS08930 (AM340_09065) yhfG 1800919..1801086 (+) 168 WP_000736860.1 YhfG family protein -
  AM340_RS08935 (AM340_09070) fic 1801076..1801678 (+) 603 WP_001280623.1 putative adenosine monophosphate-protein transferase Fic -
  AM340_RS08940 (AM340_09075) pabA 1801710..1802273 (+) 564 WP_000601887.1 aminodeoxychorismate synthase component 2 -
  AM340_RS08945 (AM340_09080) argD 1802358..1803581 (+) 1224 WP_000963789.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AM340_RS08950 (AM340_09085) yhfK 1803644..1805734 (-) 2091 WP_001571992.1 YccS/YhfK family putative transporter -
  AM340_RS08955 (AM340_09090) crp 1805785..1806417 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AM340_RS08965 (AM340_09100) yhfA 1806719..1807123 (+) 405 WP_001148908.1 OsmC family protein -
  AM340_RS08970 (AM340_09105) prkB 1807178..1808047 (-) 870 WP_001274680.1 phosphoribulokinase -
  AM340_RS08975 (AM340_09110) yheU 1808101..1808319 (-) 219 WP_000907085.1 YheU family protein -
  AM340_RS08980 (AM340_09115) yheT 1808313..1809335 (-) 1023 WP_000057386.1 hydrolase -
  AM340_RS08985 (AM340_09120) yheS 1809335..1811248 (-) 1914 WP_000634821.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=275022 AM340_RS08955 WP_000242755.1 1805785..1806417(-) (crp) [Escherichia coli strain AR_0013]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=275022 AM340_RS08955 WP_000242755.1 1805785..1806417(-) (crp) [Escherichia coli strain AR_0013]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCTTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467