Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C5I45_RS17825 Genome accession   NZ_CP027061
Coordinates   3570439..3570876 (+) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3565439..3575876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS17810 (C5I45_17795) - 3568297..3568659 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  C5I45_RS17815 (C5I45_17800) hxlA 3568891..3569526 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  C5I45_RS17820 (C5I45_17805) hxlB 3569523..3570080 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  C5I45_RS17825 (C5I45_17810) nucA/comI 3570439..3570876 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C5I45_RS17830 (C5I45_17815) nin/comJ 3570898..3571296 (+) 399 WP_003156589.1 competence protein ComJ Regulator
  C5I45_RS17835 (C5I45_17820) - 3571363..3571533 (-) 171 WP_015388717.1 family 1 glycosylhydrolase -
  C5I45_RS19695 - 3571554..3571670 (-) 117 WP_015388718.1 family 1 glycosylhydrolase -
  C5I45_RS17845 (C5I45_17825) - 3571774..3572094 (-) 321 WP_015388719.1 YckD family protein -
  C5I45_RS17850 (C5I45_17830) - 3572167..3572601 (-) 435 WP_003156592.1 RDD family protein -
  C5I45_RS17855 (C5I45_17835) - 3572616..3573752 (-) 1137 WP_107994550.1 zinc-dependent alcohol dehydrogenase -
  C5I45_RS17860 (C5I45_17840) - 3573817..3575019 (-) 1203 WP_014304313.1 GTP-binding protein -
  C5I45_RS20030 - 3575136..3575297 (+) 162 Protein_3465 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=274845 C5I45_RS17825 WP_003156588.1 3570439..3570876(+) (nucA/comI) [Bacillus sp. ZY-1-1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=274845 C5I45_RS17825 WP_003156588.1 3570439..3570876(+) (nucA/comI) [Bacillus sp. ZY-1-1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGTCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment