Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C5I45_RS19380 Genome accession   NZ_CP027061
Coordinates   3854847..3855137 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3849847..3860137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS19365 (C5I45_19340) - 3850070..3851395 (-) 1326 WP_088005470.1 G5 and 3D domain-containing protein -
  C5I45_RS19370 (C5I45_19345) - 3851530..3852297 (-) 768 WP_032868379.1 TatD family hydrolase -
  C5I45_RS19375 (C5I45_19350) metG 3852373..3854364 (-) 1992 WP_015388789.1 methionine--tRNA ligase -
  C5I45_RS19380 (C5I45_19355) abrB 3854847..3855137 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  C5I45_RS19385 (C5I45_19360) rsmI 3855187..3856068 (-) 882 WP_025854083.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C5I45_RS19390 (C5I45_19365) - 3856043..3856342 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  C5I45_RS19395 (C5I45_19370) - 3856329..3857072 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C5I45_RS19400 (C5I45_19375) yabA 3857133..3857492 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  C5I45_RS19405 (C5I45_19380) ricT 3857507..3858334 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  C5I45_RS19410 (C5I45_19385) holB 3858337..3859326 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  C5I45_RS19415 (C5I45_19390) - 3859338..3859778 (-) 441 WP_004264730.1 DUF327 family protein -
  C5I45_RS19420 (C5I45_19395) darA 3859791..3860120 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=274850 C5I45_RS19380 WP_169510469.1 3854847..3855137(+) (abrB) [Bacillus sp. ZY-1-1]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=274850 C5I45_RS19380 WP_169510469.1 3854847..3855137(+) (abrB) [Bacillus sp. ZY-1-1]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGTAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment