Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C5Y82_RS11500 Genome accession   NZ_CP027034
Coordinates   2244664..2244957 (-) Length   97 a.a.
NCBI ID   WP_012010565.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2239664..2249957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS11450 (C5Y82_11450) sinR 2239827..2240162 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  C5Y82_RS11455 (C5Y82_11455) - 2240230..2241030 (-) 801 WP_119125106.1 TasA family protein -
  C5Y82_RS11460 (C5Y82_11460) - 2241088..2241660 (-) 573 WP_088000357.1 signal peptidase I -
  C5Y82_RS11465 (C5Y82_11465) tapA 2241712..2242239 (-) 528 WP_119125107.1 amyloid fiber anchoring/assembly protein TapA -
  C5Y82_RS11470 (C5Y82_11470) - 2242539..2242817 (+) 279 WP_061827416.1 DUF3889 domain-containing protein -
  C5Y82_RS11475 (C5Y82_11475) - 2242851..2243045 (-) 195 WP_012010560.1 YqzE family protein -
  C5Y82_RS11480 (C5Y82_11480) comGG 2243105..2243488 (-) 384 WP_012010561.1 competence type IV pilus minor pilin ComGG -
  C5Y82_RS11485 (C5Y82_11485) comGF 2243485..2243985 (-) 501 WP_162900856.1 competence type IV pilus minor pilin ComGF -
  C5Y82_RS11490 (C5Y82_11490) comGE 2243924..2244241 (-) 318 WP_119125109.1 competence type IV pilus minor pilin ComGE -
  C5Y82_RS11495 (C5Y82_11495) comGD 2244225..2244671 (-) 447 WP_119125110.1 competence type IV pilus minor pilin ComGD -
  C5Y82_RS11500 (C5Y82_11500) comGC 2244664..2244957 (-) 294 WP_012010565.1 competence type IV pilus major pilin ComGC Machinery gene
  C5Y82_RS11505 (C5Y82_11505) comGB 2244974..2246053 (-) 1080 WP_240389010.1 competence type IV pilus assembly protein ComGB -
  C5Y82_RS11510 (C5Y82_11510) comGA 2245995..2247065 (-) 1071 WP_119125111.1 competence type IV pilus ATPase ComGA Machinery gene
  C5Y82_RS11515 (C5Y82_11515) - 2247265..2248415 (-) 1151 Protein_2217 IS3 family transposase -
  C5Y82_RS11520 (C5Y82_11520) - 2248530..2249402 (-) 873 WP_012010568.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.70 Da        Isoelectric Point: 7.3839

>NTDB_id=274653 C5Y82_RS11500 WP_012010565.1 2244664..2244957(-) (comGC) [Bacillus pumilus strain 150a]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGRTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=274653 C5Y82_RS11500 WP_012010565.1 2244664..2244957(-) (comGC) [Bacillus pumilus strain 150a]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTTATTACCATTCC
GAATATCACTCGTCATCATCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTGAGCACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAGAACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment