Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | C5Y82_RS11450 | Genome accession | NZ_CP027034 |
| Coordinates | 2239827..2240162 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain 150a | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2234827..2245162
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5Y82_RS11430 (C5Y82_11430) | gcvT | 2235305..2236402 (-) | 1098 | WP_012010552.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| C5Y82_RS11435 (C5Y82_11435) | - | 2236964..2238634 (+) | 1671 | WP_012010553.1 | SNF2-related protein | - |
| C5Y82_RS11440 (C5Y82_11440) | - | 2238649..2239446 (+) | 798 | WP_012010554.1 | YqhG family protein | - |
| C5Y82_RS11445 (C5Y82_11445) | - | 2239629..2239793 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| C5Y82_RS11450 (C5Y82_11450) | sinR | 2239827..2240162 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| C5Y82_RS11455 (C5Y82_11455) | - | 2240230..2241030 (-) | 801 | WP_119125106.1 | TasA family protein | - |
| C5Y82_RS11460 (C5Y82_11460) | - | 2241088..2241660 (-) | 573 | WP_088000357.1 | signal peptidase I | - |
| C5Y82_RS11465 (C5Y82_11465) | tapA | 2241712..2242239 (-) | 528 | WP_119125107.1 | amyloid fiber anchoring/assembly protein TapA | - |
| C5Y82_RS11470 (C5Y82_11470) | - | 2242539..2242817 (+) | 279 | WP_061827416.1 | DUF3889 domain-containing protein | - |
| C5Y82_RS11475 (C5Y82_11475) | - | 2242851..2243045 (-) | 195 | WP_012010560.1 | YqzE family protein | - |
| C5Y82_RS11480 (C5Y82_11480) | comGG | 2243105..2243488 (-) | 384 | WP_012010561.1 | competence type IV pilus minor pilin ComGG | - |
| C5Y82_RS11485 (C5Y82_11485) | comGF | 2243485..2243985 (-) | 501 | WP_162900856.1 | competence type IV pilus minor pilin ComGF | - |
| C5Y82_RS11490 (C5Y82_11490) | comGE | 2243924..2244241 (-) | 318 | WP_119125109.1 | competence type IV pilus minor pilin ComGE | - |
| C5Y82_RS11495 (C5Y82_11495) | comGD | 2244225..2244671 (-) | 447 | WP_119125110.1 | competence type IV pilus minor pilin ComGD | - |
| C5Y82_RS11500 (C5Y82_11500) | comGC | 2244664..2244957 (-) | 294 | WP_012010565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=274652 C5Y82_RS11450 WP_012010555.1 2239827..2240162(+) (sinR) [Bacillus pumilus strain 150a]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=274652 C5Y82_RS11450 WP_012010555.1 2239827..2240162(+) (sinR) [Bacillus pumilus strain 150a]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |