Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   C5Y82_RS06425 Genome accession   NZ_CP027034
Coordinates   1293722..1295824 (-) Length   700 a.a.
NCBI ID   WP_119124762.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288722..1300824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS06400 (C5Y82_06400) - 1289310..1289552 (+) 243 WP_012009739.1 aspartyl-phosphate phosphatase Spo0E family protein -
  C5Y82_RS06405 (C5Y82_06405) - 1289600..1291105 (-) 1506 WP_119124761.1 ATP-binding protein -
  C5Y82_RS06410 (C5Y82_06410) - 1291311..1291766 (+) 456 WP_003211701.1 MarR family transcriptional regulator -
  C5Y82_RS06415 (C5Y82_06415) motB 1291796..1292560 (-) 765 WP_012009741.1 flagellar motor protein MotB -
  C5Y82_RS06420 (C5Y82_06420) motA 1292553..1293347 (-) 795 WP_012009742.1 flagellar motor stator protein MotA -
  C5Y82_RS06425 (C5Y82_06425) clpC 1293722..1295824 (-) 2103 WP_119124762.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  C5Y82_RS06430 (C5Y82_06430) - 1296070..1297113 (+) 1044 WP_119124763.1 hypothetical protein -
  C5Y82_RS06435 (C5Y82_06435) queC 1297389..1298045 (+) 657 WP_012009745.1 7-cyano-7-deazaguanine synthase QueC -
  C5Y82_RS06440 (C5Y82_06440) queD 1298046..1298486 (+) 441 WP_012009746.1 6-carboxytetrahydropterin synthase QueD -
  C5Y82_RS06445 (C5Y82_06445) queE 1298479..1299210 (+) 732 WP_119124764.1 7-carboxy-7-deazaguanine synthase QueE -
  C5Y82_RS06450 (C5Y82_06450) queF 1299226..1299723 (+) 498 WP_003211403.1 preQ(1) synthase -
  C5Y82_RS06465 (C5Y82_06465) - 1300189..1300407 (+) 219 WP_119124765.1 hypothetical protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77901.55 Da        Isoelectric Point: 5.1735

>NTDB_id=274640 C5Y82_RS06425 WP_119124762.1 1293722..1295824(-) (clpC) [Bacillus pumilus strain 150a]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHTQNVEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQGRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQAEAIDILKGIQDKYESYHGITYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLSEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNHKEHVVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSREAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSAQLKEQNLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEDKLSGFTVAVEDNEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=274640 C5Y82_RS06425 WP_119124762.1 1293722..1295824(-) (clpC) [Bacillus pumilus strain 150a]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGAGCAAGCCGGACATACGCAAAACGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGCCGAAAT
TTAACAGATGGCGCGAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAACAATCCCGTCCTCATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTTGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCGTCCCTTGTCGCG
AACACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTGCAAGGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATTCATCTTCTTGTAGGCGCAGGGTCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCACTT
GAACGGCGCTTCCAGCCCGTCATTGTAGATGAGCCAACACAAGCTGAAGCGATTGATATTTTAAAAGGCATTCAAGATAA
GTATGAAAGCTACCATGGTATCACCTATTCAGACGAAGCGATTCAAGCTTGTGTTCAATTATCTTCACGGTATATCCAGG
ACCGGCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAGGCGAACCTCTCCATTGATGCCGCAAGT
GAAGATGAACTAACAAATCGCCTGAGTGAAATTGCTGCTGAAAAACAGGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCAAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATCACAAAGAACATGTCGTCACAG
CAGAAGACATTCAAGCCATTGTCGAACAAAAAACAGGCATCCCTGTTGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGAGTGATCGGTCAGGAACATGCGGTTGAAAAAGTCGCAAAAGCTGTGAAGAG
AAGTAGAGCCGGCTTAAAATCAAAACATAGACCAACTGGCTCCTTCCTATTCGTTGGACCAACAGGTGTTGGGAAAACCG
AATTATCAAAAACGCTAGCTGAAGAATTATTTGGTTCACGCGAGGCGATCATCCGATTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCTAAGCTCATCGGTTCTCCACCTGGTTATGTTGGACATGATGAAGCAGGTCAACTGACAGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCTGATGTGCAGCACATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACTGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTTAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCAATCGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAACCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCCTTAGATCGAGATG
ATTTAGTGAAGATTGTAGATCTTCTGCTCAATGAGCTGTCAGCACAATTAAAAGAGCAAAATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCACGTTGAAGATCAAATGACGGAGATATTGCTTGAAGAAGATAAGCTTTCAGGATTTACTGTAGCTGTTGAAGATAACG
AAATTGTCGTTAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA lid domain (AAA_lid_9)

(254-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.098

100

0.591
  clpE Streptococcus mutans UA159

57.182

100

0.591
  clpE Streptococcus pneumoniae Rx1

55.11

100

0.57
  clpE Streptococcus pneumoniae D39

55.11

100

0.57
  clpE Streptococcus pneumoniae R6

55.11

100

0.57
  clpE Streptococcus pneumoniae TIGR4

55.11

100

0.57
  clpC Bacillus subtilis subsp. subtilis str. 168

53.433

95.714

0.511
  clpC Streptococcus thermophilus LMD-9

45.904

92.429

0.424
  clpC Streptococcus thermophilus LMG 18311

45.75

92.429

0.423
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.541

90.857

0.423
  clpC Streptococcus pneumoniae TIGR4

45.701

89.714

0.41
  clpC Streptococcus mutans UA159

44.018

93.143

0.41
  clpC Streptococcus pneumoniae Rx1

45.907

89

0.409
  clpC Streptococcus pneumoniae D39

45.907

89

0.409
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.708

87

0.363

Multiple sequence alignment