Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | D3C65_RS24010 | Genome accession | NZ_CP032126 |
| Coordinates | 5072193..5073065 (+) | Length | 290 a.a. |
| NCBI ID | WP_003112839.1 | Uniprot ID | P22610 |
| Organism | Pseudomonas aeruginosa strain PAO1161 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5067193..5078065
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3C65_RS23985 (D3C65_23965) | nadC | 5067534..5068382 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| D3C65_RS23995 (D3C65_23975) | pilA | 5068584..5069033 (-) | 450 | WP_003112842.1 | type 4a pilus biogenesis protein PilA | Machinery gene |
| D3C65_RS24000 (D3C65_23980) | pilB | 5069265..5070965 (+) | 1701 | WP_003112841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D3C65_RS24005 (D3C65_23985) | pilC | 5070969..5072189 (+) | 1221 | WP_003112840.1 | type 4a pilus biogenesis protein PilC | Machinery gene |
| D3C65_RS24010 (D3C65_23990) | pilD | 5072193..5073065 (+) | 873 | WP_003112839.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| D3C65_RS24015 (D3C65_23995) | coaE | 5073062..5073673 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| D3C65_RS24020 (D3C65_24000) | yacG | 5073670..5073870 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| D3C65_RS24025 (D3C65_24005) | - | 5073907..5074116 (-) | 210 | WP_003094660.1 | hypothetical protein | - |
| D3C65_RS24030 (D3C65_24010) | - | 5074222..5074911 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| D3C65_RS24035 (D3C65_24015) | - | 5074908..5075378 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| D3C65_RS24040 (D3C65_24020) | - | 5075375..5075800 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| D3C65_RS24045 (D3C65_24025) | - | 5075933..5076562 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| D3C65_RS24050 (D3C65_24030) | - | 5076559..5077008 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| D3C65_RS24055 (D3C65_24035) | - | 5077034..5077204 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31869.92 Da Isoelectric Point: 7.7068
>NTDB_id=274637 D3C65_RS24010 WP_003112839.1 5072193..5073065(+) (pilD) [Pseudomonas aeruginosa strain PAO1161]
MPLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MPLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=274637 D3C65_RS24010 WP_003112839.1 5072193..5073065(+) (pilD) [Pseudomonas aeruginosa strain PAO1161]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCTAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50.19 |
90.69 |
0.455 |