Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   D2E16_RS12025 Genome accession   NZ_CP032064
Coordinates   2470283..2471182 (-) Length   299 a.a.
NCBI ID   WP_192369084.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 2465283..2476182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS11995 (D2E16_12380) - 2465726..2466250 (-) 525 WP_002941931.1 hypothetical protein -
  D2E16_RS12000 (D2E16_12385) - 2466378..2466572 (+) 195 WP_002941929.1 hypothetical protein -
  D2E16_RS12005 (D2E16_12390) - 2466612..2466911 (-) 300 WP_024379382.1 hypothetical protein -
  D2E16_RS12010 (D2E16_12395) - 2466904..2467545 (-) 642 WP_002941927.1 ABC transporter ATP-binding protein -
  D2E16_RS12015 (D2E16_12400) - 2467547..2469577 (-) 2031 WP_192369085.1 bacteriocin-associated integral membrane family protein -
  D2E16_RS12020 (D2E16_12405) - 2469637..2469930 (-) 294 WP_105138597.1 lactococcin 972 family bacteriocin -
  D2E16_RS12025 (D2E16_12415) comR 2470283..2471182 (-) 900 WP_192369084.1 helix-turn-helix domain-containing protein Regulator
  D2E16_RS12030 (D2E16_12420) malQ 2471293..2472807 (-) 1515 WP_192369083.1 4-alpha-glucanotransferase -
  D2E16_RS12035 (D2E16_12425) - 2473109..2474368 (+) 1260 WP_002941908.1 extracellular solute-binding protein -
  D2E16_RS12040 (D2E16_12430) - 2474475..2475770 (+) 1296 WP_009911009.1 sugar ABC transporter permease -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35572.03 Da        Isoelectric Point: 4.5956

>NTDB_id=274232 D2E16_RS12025 WP_192369084.1 2470283..2471182(-) (comR) [Streptococcus suis strain YSJ17]
MELGKKIEQLRLEKGLSRPDFCGDESELTVRQLARIESGQSQPSIPKLEYIAQRLGIPAYSLMPDYKELPQGYLELKYKL
LREPMYNKVEVLDKKELQLEDLYNRYYEELPLDEQRVYSVLQATIDTTSSRNPEFASAILDEYLPSLETKTVYTINEILL
IRLFFFQLLERKDIYQYGQKIDLFMLRLVEQFKITRQEDYFIVRDVLFSGLCCLEMIEHYDYFDTYLECLQDVMEATEDY
QKKPLVLMLIWKQLLRKTQDFSAAEPMFQSAKTFAKIIGNDHLAQKLTEEWQEDLKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=274232 D2E16_RS12025 WP_192369084.1 2470283..2471182(-) (comR) [Streptococcus suis strain YSJ17]
ATGGAGTTGGGAAAGAAAATTGAGCAACTGAGGCTAGAAAAGGGACTGAGCCGTCCAGATTTTTGTGGAGATGAATCCGA
GTTGACGGTACGCCAATTAGCTCGGATAGAAAGTGGTCAATCGCAGCCCTCTATCCCAAAGCTAGAGTACATTGCCCAGC
GTTTGGGTATTCCAGCCTATAGCCTGATGCCAGACTATAAGGAACTACCACAAGGTTATTTGGAACTCAAGTATAAGTTG
CTGCGGGAACCGATGTATAATAAGGTTGAGGTGTTGGATAAAAAGGAGCTACAGTTAGAAGACCTTTATAATCGTTATTA
CGAAGAGCTACCTTTAGATGAACAGCGAGTGTATAGCGTTCTGCAAGCAACGATAGATACGACAAGTAGTAGAAATCCAG
AATTTGCTAGTGCTATACTAGATGAGTATCTACCGAGCTTGGAAACTAAAACAGTCTATACTATTAATGAAATCTTGTTA
ATTCGTCTCTTTTTCTTTCAGTTGCTAGAAAGAAAGGACATCTATCAGTACGGACAAAAGATAGATTTATTTATGTTACG
GCTTGTTGAGCAGTTTAAAATTACTCGTCAAGAAGATTATTTTATTGTGCGTGATGTACTCTTTTCAGGTCTATGCTGCC
TTGAAATGATTGAGCACTATGATTATTTTGATACTTATCTGGAGTGTTTGCAGGATGTTATGGAAGCGACGGAGGATTAT
CAGAAAAAACCACTTGTATTGATGCTCATTTGGAAGCAACTATTGAGAAAGACACAAGATTTTTCAGCTGCTGAGCCGAT
GTTTCAATCAGCTAAAACTTTTGCCAAAATCATCGGAAATGACCATCTGGCACAGAAATTGACAGAAGAGTGGCAAGAAG
ATTTGAAAAAATATTTGTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)

Helix-turn-helix (HTH_3)

(7-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

37.333

100

0.375
  comR Streptococcus mutans UA159

37

100

0.371
  comR Streptococcus suis P1/7

36.735

98.328

0.361
  comR Streptococcus suis 05ZYH33

36.735

98.328

0.361