Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D2E16_RS05505 Genome accession   NZ_CP032064
Coordinates   1122926..1124911 (+) Length   661 a.a.
NCBI ID   WP_192369482.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117926..1129911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS05490 (D2E16_05605) - 1119241..1119732 (+) 492 WP_105131124.1 GNAT family N-acetyltransferase -
  D2E16_RS05495 (D2E16_05610) - 1119790..1120530 (-) 741 WP_024390062.1 amino acid ABC transporter ATP-binding protein -
  D2E16_RS05500 (D2E16_05615) - 1120530..1122728 (-) 2199 WP_192369483.1 ABC transporter substrate-binding protein/permease -
  D2E16_RS05505 (D2E16_05620) uvrB 1122926..1124911 (+) 1986 WP_192369482.1 excinuclease ABC subunit UvrB Machinery gene
  D2E16_RS05510 (D2E16_05625) - 1125415..1125822 (+) 408 WP_225620788.1 YSIRK-type signal peptide-containing protein -
  D2E16_RS05515 (D2E16_05630) - 1125891..1126394 (+) 504 WP_161948394.1 GNAT family N-acetyltransferase -
  D2E16_RS05520 (D2E16_05635) - 1126387..1126854 (+) 468 WP_192369481.1 8-oxo-dGTP diphosphatase -
  D2E16_RS05525 (D2E16_05640) - 1127054..1127863 (+) 810 WP_398593118.1 transporter substrate-binding domain-containing protein -
  D2E16_RS05530 (D2E16_05645) - 1128035..1128835 (+) 801 WP_011922504.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 75578.55 Da        Isoelectric Point: 4.6199

>NTDB_id=274182 D2E16_RS05505 WP_192369482.1 1122926..1124911(+) (uvrB) [Streptococcus suis strain YSJ17]
MINRNTENQFKLVSKYAPSGDQPQAIETLVDNIEGGEKAQILMGATGTGKTYTMSQVIARVNKPTLVIAHNKTLAGQLYS
EFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYS
DSVVSLRPGQEISRDQLLNSLVDIQFERNDIDFQRGRFRVRGDVVEVFPASRDEHAFRVEFFGDEIDRIREIESLTGKVL
GDVDHLAIFPATHFVTNDDHMETAIAKIQAELEEQLKVFEAEGKLLEAQRLKQRTDYDIEMLREMGYTNGVENYSRHMDG
RSEGEPPYTLLDFFPEDYLIMIDESHMTMGQIKGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGDYEMEQTETVVEQIIRPTGLLDPEVEVRPTMGQMDDLLGEINARVEKGERTFITTLTKKMAEDLTDYLKEMGVKVKYM
HSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADK
VTESMRKAMDETARRRQIQMAYNEEHGIIPQTIKKEIRDLISVTKAVTQDKEEVVDFNALNKDERKAMIKKLEGRMQEAA
EVLDFELAAQIRDMVIELKNT

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=274182 D2E16_RS05505 WP_192369482.1 1122926..1124911(+) (uvrB) [Streptococcus suis strain YSJ17]
ATGATTAACCGAAATACTGAAAACCAATTTAAACTTGTGTCAAAATATGCACCGTCTGGTGACCAGCCCCAAGCCATTGA
AACCTTGGTCGATAATATCGAGGGTGGAGAAAAAGCCCAGATTCTCATGGGGGCGACTGGTACTGGTAAGACCTACACCA
TGAGCCAGGTCATCGCCCGTGTCAATAAGCCAACCTTAGTCATCGCCCACAACAAGACCCTAGCTGGTCAGCTTTATAGT
GAGTTCAAGGAATTCTTCCCAGAAAATGCGGTTGAATACTTTGTGTCTTACTATGATTACTACCAGCCAGAAGCTTATGT
ACCGTCTAGCGATACCTATATTGAGAAGGACAGTTCGGTCAATGATGAGATTGACAAACTCCGTCACTCAGCGACCTCAG
CTCTTCTCGAACGCAACGATGTCATCGTCGTTGCCTCCGTTTCCTGTATCTACGGTTTGGGATCGCCCAAGGAATATTCT
GACAGCGTGGTCAGTCTGCGACCAGGTCAGGAGATTTCCCGTGATCAGTTACTCAATTCTCTGGTAGATATCCAGTTTGA
GCGGAACGACATCGACTTCCAACGGGGACGCTTCCGTGTACGTGGGGATGTAGTAGAAGTCTTTCCAGCCTCCCGTGACG
AACACGCCTTCCGTGTGGAGTTTTTCGGGGATGAAATCGACCGCATTCGTGAGATTGAAAGCCTGACTGGTAAGGTTTTA
GGCGATGTGGATCACTTGGCGATTTTCCCTGCCACCCACTTCGTGACCAACGATGACCACATGGAAACGGCTATTGCCAA
GATCCAGGCGGAACTGGAAGAGCAGCTCAAGGTCTTTGAGGCAGAAGGAAAACTCTTAGAAGCTCAGCGATTGAAACAAC
GAACCGACTACGACATCGAGATGCTTCGAGAAATGGGCTACACCAACGGAGTTGAGAACTATTCTCGCCACATGGACGGG
CGAAGCGAGGGCGAGCCTCCGTACACACTGCTGGACTTTTTCCCTGAAGACTACCTGATTATGATTGACGAGAGCCACAT
GACCATGGGGCAGATTAAGGGGATGTACAATGGTGACCGCTCACGCAAGGAGATGTTGGTCAACTATGGTTTCCGCCTCC
CGAGTGCACTGGACAACCGTCCGCTGCGCAGGGAAGAATTTGAGAGCCATGTCCATCAGATTGTCTATGTATCTGCGACG
CCAGGTGACTATGAAATGGAGCAGACAGAGACCGTTGTCGAGCAGATTATCCGACCAACAGGGCTTTTGGATCCAGAAGT
AGAAGTCCGTCCAACCATGGGCCAAATGGACGACCTCTTGGGCGAAATCAATGCCCGTGTTGAAAAAGGCGAGCGAACCT
TTATCACTACCCTGACCAAGAAAATGGCAGAGGACTTGACCGATTACTTGAAAGAAATGGGTGTCAAGGTCAAGTATATG
CACTCGGACATCAAGACCTTGGAGCGTACGGAGATTATCCGTGATTTGCGCTTGGGTGTCTTTGATGTCTTAATAGGGAT
TAACCTCTTGCGTGAAGGGATTGACGTGCCAGAAGTTAGTCTGGTCGCTATCTTGGACGCAGATAAGGAAGGTTTCCTCC
GAAACGAGCGTGGACTCATCCAGACAATTGGTCGGGCAGCTCGTAACTCTGAGGGGCATGTGATTATGTATGCGGACAAG
GTCACTGAATCTATGCGCAAGGCTATGGACGAAACCGCCCGCCGTCGTCAAATCCAAATGGCTTATAATGAAGAACATGG
CATTATTCCACAGACCATTAAGAAAGAAATCCGTGACCTGATTAGTGTCACCAAGGCTGTCACTCAGGACAAGGAAGAAG
TAGTGGACTTCAACGCCCTCAACAAAGACGAACGCAAGGCCATGATTAAGAAACTGGAAGGTCGAATGCAGGAAGCAGCA
GAAGTGCTTGACTTTGAACTGGCAGCCCAGATTCGTGATATGGTCATTGAGTTGAAGAATACGTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(626-660)

Ultra-violet resistance protein B (UvrB)

(556-598)

Type III restriction enzyme, res subunit (ResIII)

(21-143)

Helicase conserved C-terminal domain (Helicase_C)

(445-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

91.351

99.697

0.911
  uvrB Streptococcus pneumoniae D39

91.351

99.697

0.911
  uvrB Streptococcus pneumoniae TIGR4

91.199

99.697

0.909