Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D2E16_RS03060 Genome accession   NZ_CP032064
Coordinates   608974..609657 (+) Length   227 a.a.
NCBI ID   WP_024418787.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 603974..614657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS03030 (D2E16_03130) lgt 604416..605192 (+) 777 WP_004194809.1 prolipoprotein diacylglyceryl transferase -
  D2E16_RS03035 (D2E16_03135) - 605206..605616 (+) 411 WP_314742707.1 DUF948 domain-containing protein -
  D2E16_RS03040 (D2E16_03140) - 605600..606136 (+) 537 WP_024396152.1 YtxH domain-containing protein -
  D2E16_RS03045 (D2E16_03145) - 606164..606382 (-) 219 Protein_552 winged helix-turn-helix transcriptional regulator -
  D2E16_RS03050 (D2E16_03150) - 606522..607646 (+) 1125 WP_192369125.1 aminotransferase -
  D2E16_RS03055 (D2E16_03155) - 607661..608830 (-) 1170 WP_192369126.1 DUF2974 domain-containing protein -
  D2E16_RS03060 (D2E16_03160) braR 608974..609657 (+) 684 WP_024418787.1 response regulator transcription factor Regulator
  D2E16_RS03065 (D2E16_03165) - 609650..610642 (+) 993 WP_192369127.1 sensor histidine kinase -
  D2E16_RS03070 (D2E16_03170) - 610738..611496 (+) 759 WP_192369128.1 ABC transporter ATP-binding protein -
  D2E16_RS03075 (D2E16_03175) - 611498..613510 (+) 2013 WP_192369129.1 ABC transporter permease -
  D2E16_RS03080 (D2E16_03180) - 613698..613862 (+) 165 WP_099806507.1 hypothetical protein -
  D2E16_RS03085 (D2E16_03185) - 613859..614175 (+) 317 Protein_560 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26755.08 Da        Isoelectric Point: 4.7871

>NTDB_id=274173 D2E16_RS03060 WP_024418787.1 608974..609657(+) (braR) [Streptococcus suis strain YSJ17]
MQKILVIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEVSLDLKTMQVSYKQDVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELRLPNLIMTKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=274173 D2E16_RS03060 WP_024418787.1 608974..609657(+) (braR) [Streptococcus suis strain YSJ17]
ATGCAAAAGATTTTAGTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTATCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTGCTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTATCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGCGAACAAAGTTTGCTCTGGTTTGAAGAAG
TTTCCTTGGACTTGAAGACCATGCAGGTGTCCTATAAACAGGATGTAGAGGAATTGACCCGAAATGAATTTCAGATTTTA
CGGGTGCTTTTTGAACATGGCAAGGAAGTCGTCAGCCGTGAGGAGCTGATGCGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACCCTGTCGGTAAACATTGCTCGCCTGCGTAAAAAGTTGGCAGAGTTGCGCTTGCCTAACTTGATTATGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACGCATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.248

96.035

0.454
  vicR Streptococcus mutans UA159

39.301

100

0.396
  micA Streptococcus pneumoniae Cp1015

38.596

100

0.388