Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   D2E16_RS02780 Genome accession   NZ_CP032064
Coordinates   558266..558916 (+) Length   216 a.a.
NCBI ID   WP_024376704.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 553266..563916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS02755 (D2E16_02845) - 553919..555208 (-) 1290 WP_194472458.1 IS4 family transposase -
  D2E16_RS02760 (D2E16_02850) - 555451..555603 (+) 153 WP_099870668.1 YSIRK-type signal peptide-containing protein -
  D2E16_RS02765 (D2E16_02855) - 555563..556147 (+) 585 WP_192369106.1 hypothetical protein -
  D2E16_RS02770 (D2E16_02860) - 556144..556875 (+) 732 WP_192369107.1 hypothetical protein -
  D2E16_RS02775 (D2E16_02865) - 557128..557829 (-) 702 WP_099776509.1 CPBP family intramembrane glutamic endopeptidase -
  D2E16_RS02780 (D2E16_02870) scnR 558266..558916 (+) 651 WP_024376704.1 response regulator transcription factor Regulator
  D2E16_RS02785 (D2E16_02875) - 558918..560288 (+) 1371 WP_024378965.1 sensor histidine kinase -
  D2E16_RS02790 (D2E16_02885) - 560894..561445 (+) 552 WP_024409755.1 isoprenylcysteine carboxyl methyltransferase family protein -
  D2E16_RS02795 (D2E16_02890) - 561654..562562 (-) 909 Protein_503 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24768.88 Da        Isoelectric Point: 4.6866

>NTDB_id=274169 D2E16_RS02780 WP_024376704.1 558266..558916(+) (scnR) [Streptococcus suis strain YSJ17]
MSRILVVEDDIVISQVVCEFLKEYGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQIPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGDTDSIEIGTILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEDT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=274169 D2E16_RS02780 WP_024376704.1 558266..558916(+) (scnR) [Streptococcus suis strain YSJ17]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAATATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGATTCCAATTTTGATGCTGACAGCC
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCATTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGATACAGATAGCATTGAGATAGGAACAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTAACAAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGCCGTGTCTT
AGATAATCATATCAAGAATATACGTAAAAAATTGCCGTCACTTCCTTTGAAGACAGTTGTTGGTCGTGGTTATCAAATAG
AGGATACTTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

37.838

100

0.389
  micA Streptococcus pneumoniae Cp1015

36.889

100

0.384
  vicR Streptococcus mutans UA159

36.283

100

0.38