Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   RL01_RS02910 Genome accession   NZ_CP026957
Coordinates   510583..511080 (+) Length   165 a.a.
NCBI ID   WP_001789864.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDAARGOS_43     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505583..516080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL01_RS02875 (RL01_02875) - 506568..506897 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RL01_RS02880 (RL01_02880) - 506894..507517 (+) 624 WP_001223010.1 MBL fold metallo-hydrolase -
  RL01_RS02885 (RL01_02885) comGA 507569..508543 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  RL01_RS02890 (RL01_02890) comGB 508515..509585 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  RL01_RS02895 (RL01_02895) comGC 509599..509910 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  RL01_RS02900 (RL01_02900) comGD 509888..510334 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  RL01_RS02905 (RL01_02905) comGE 510321..510665 (+) 345 WP_000844411.1 hypothetical protein Machinery gene
  RL01_RS02910 (RL01_02910) comGF 510583..511080 (+) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  RL01_RS02915 (RL01_02915) - 511177..511323 (+) 147 WP_001789879.1 hypothetical protein -
  RL01_RS02920 (RL01_02920) - 511313..511837 (+) 525 WP_001015121.1 shikimate kinase -
  RL01_RS02925 (RL01_02925) gcvT 511996..513087 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  RL01_RS02930 (RL01_02930) gcvPA 513107..514453 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RL01_RS02935 (RL01_02935) gcvPB 514446..515918 (+) 1473 WP_000202189.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19164.88 Da        Isoelectric Point: 10.2192

>NTDB_id=273798 RL01_RS02910 WP_001789864.1 510583..511080(+) (comGF) [Staphylococcus aureus strain FDAARGOS_43]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRDLTTVDFEFFSRDI
LDDFKGVDRNDIEIRQHRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=273798 RL01_RS02910 WP_001789864.1 510583..511080(+) (comGF) [Staphylococcus aureus strain FDAARGOS_43]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGTAAAACTTTTCTAATTGAAAGTAGGGATTTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGATGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACACCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATTAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(67-155)

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

100

100

1
  comGF Staphylococcus aureus N315

96.364

100

0.964

Multiple sequence alignment