Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   B9S25_RS01885 Genome accession   NZ_CP031922
Coordinates   410252..410884 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 405252..415884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS01860 (B9S25_001970) yhfG 405384..405551 (+) 168 WP_000736860.1 YhfG family protein -
  B9S25_RS01865 (B9S25_001975) fic 405541..406143 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  B9S25_RS01870 (B9S25_001980) pabA 406175..406738 (+) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  B9S25_RS01875 (B9S25_001985) argD 406824..408044 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  B9S25_RS01880 (B9S25_001990) yhfK 408111..410201 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  B9S25_RS01885 (B9S25_001995) crp 410252..410884 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  B9S25_RS01890 (B9S25_002005) yhfA 411186..411590 (+) 405 WP_001148908.1 OsmC family protein -
  B9S25_RS01895 (B9S25_002010) prkB 411645..412514 (-) 870 WP_001274680.1 phosphoribulokinase -
  B9S25_RS01900 (B9S25_002015) yheU 412568..412786 (-) 219 WP_000907085.1 YheU family protein -
  B9S25_RS01905 (B9S25_002020) yheT 412780..413802 (-) 1023 WP_000057356.1 hydrolase -
  B9S25_RS01910 (B9S25_002025) yheS 413802..415715 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=273639 B9S25_RS01885 WP_000242755.1 410252..410884(-) (crp) [Escherichia coli O26:H11 strain FWSEC0001]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=273639 B9S25_RS01885 WP_000242755.1 410252..410884(-) (crp) [Escherichia coli O26:H11 strain FWSEC0001]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467