Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CCU01_RS02210 Genome accession   NZ_CP031919
Coordinates   458658..459290 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O145:NM strain FWSEC0002     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 453658..464290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU01_RS02185 (CCU01_002295) yhfG 453790..453957 (+) 168 WP_000736862.1 YhfG family protein -
  CCU01_RS02190 (CCU01_002300) fic 453947..454549 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  CCU01_RS02195 (CCU01_002305) pabA 454581..455144 (+) 564 WP_000601869.1 aminodeoxychorismate synthase component 2 -
  CCU01_RS02200 (CCU01_002310) argD 455230..456450 (+) 1221 WP_000963777.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CCU01_RS02205 (CCU01_002315) yhfK 456517..458607 (-) 2091 WP_001400404.1 YccS/YhfK family putative transporter -
  CCU01_RS02210 (CCU01_002320) crp 458658..459290 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CCU01_RS02215 (CCU01_002330) yhfA 459592..459996 (+) 405 WP_001148912.1 OsmC family protein -
  CCU01_RS02220 (CCU01_002335) prkB 460051..460920 (-) 870 WP_001274680.1 phosphoribulokinase -
  CCU01_RS02225 (CCU01_002340) yheU 460974..461192 (-) 219 WP_000907085.1 YheU family protein -
  CCU01_RS02230 (CCU01_002345) yheT 461186..462208 (-) 1023 WP_000057365.1 hydrolase -
  CCU01_RS02235 (CCU01_002350) yheS 462208..464121 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=273559 CCU01_RS02210 WP_000242755.1 458658..459290(-) (crp) [Escherichia coli O145:NM strain FWSEC0002]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=273559 CCU01_RS02210 WP_000242755.1 458658..459290(-) (crp) [Escherichia coli O145:NM strain FWSEC0002]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTCAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467