Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CCU04_RS01905 Genome accession   NZ_CP031908
Coordinates   412495..413127 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli O103:H2 strain FWSEC0007     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 407495..418127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU04_RS01880 (CCU04_002005) yhfG 407627..407794 (+) 168 WP_000736860.1 YhfG family protein -
  CCU04_RS01885 (CCU04_002010) fic 407784..408386 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  CCU04_RS01890 (CCU04_002015) pabA 408418..408981 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  CCU04_RS01895 (CCU04_002020) argD 409067..410287 (+) 1221 WP_000963797.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  CCU04_RS01900 (CCU04_002025) yhfK 410354..412444 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  CCU04_RS01905 (CCU04_002030) crp 412495..413127 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  CCU04_RS01910 (CCU04_002045) yhfA 413429..413833 (+) 405 WP_001148904.1 OsmC family protein -
  CCU04_RS01915 (CCU04_002050) prkB 413888..414757 (-) 870 WP_001274680.1 phosphoribulokinase -
  CCU04_RS01920 (CCU04_002055) yheU 414811..415029 (-) 219 WP_000907085.1 YheU family protein -
  CCU04_RS01925 (CCU04_002060) yheT 415023..416045 (-) 1023 WP_000057405.1 hydrolase -
  CCU04_RS01930 (CCU04_002065) yheS 416045..417958 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=273158 CCU04_RS01905 WP_000242755.1 412495..413127(-) (crp) [Escherichia coli O103:H2 strain FWSEC0007]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=273158 CCU04_RS01905 WP_000242755.1 412495..413127(-) (crp) [Escherichia coli O103:H2 strain FWSEC0007]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment