Detailed information NTG0273033

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C5F70_RS20415
• Genome accession: NZ_CP026880
• Coordinates: 4420045..4420911 (+)
• Length: 288 a.a.
• NCBI ID: WP_017845470.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LH1G9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4415045..4425911

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5F70_RS20385	nadC	4415334..4416182 (+)	849	WP_046384727.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C5F70_RS20390	-	4416226..4416531 (-)	306	WP_017845466.1	DUF6388 family protein	-
C5F70_RS20400	-	4416780..4418189 (-)	1410	WP_104903959.1	O-antigen ligase	-
C5F70_RS20405	-	4418225..4418638 (-)	414	WP_017845468.1	pilin	-
C5F70_RS20410	pilC	4418840..4420048 (+)	1209	WP_017845469.1	type II secretion system F family protein	Machinery gene
C5F70_RS20415	pilD	4420045..4420911 (+)	867	WP_017845470.1	A24 family peptidase	Machinery gene
C5F70_RS20420	coaE	4420908..4421531 (+)	624	WP_017845471.1	dephospho-CoA kinase	-
C5F70_RS20425	yacG	4421528..4421728 (+)	201	WP_017845472.1	DNA gyrase inhibitor YacG	-
C5F70_RS20430	-	4421725..4421940 (-)	216	WP_003171680.1	hypothetical protein	-
C5F70_RS20435	-	4422017..4422706 (-)	690	WP_017845473.1	energy-coupling factor ABC transporter permease	-
C5F70_RS20440	-	4422703..4423170 (-)	468	WP_104903960.1	FAD/FMN-containing dehydrogenase	-
C5F70_RS20445	-	4423270..4423899 (+)	630	WP_017845475.1	DUF1780 domain-containing protein	-
C5F70_RS20450	-	4423990..4424163 (+)	174	WP_016976295.1	DUF3094 family protein	-
C5F70_RS20455	-	4424224..4425522 (+)	1299	WP_017845476.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31887.18 Da
• Isoelectric Point: 7.9058

>NTDB_id=273033 C5F70_RS20415 WP_017845470.1 4420045..4420911(+) (pilD) [Pseudomonas sp. LH1G9]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISTRYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK

Nucleotide

• Length: 867 bp

>NTDB_id=273033 C5F70_RS20415 WP_017845470.1 4420045..4420911(+) (pilD) [Pseudomonas sp. LH1G9]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCACACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTGCTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTACGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGCTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-241)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.036	96.528	0.531
pilD	Vibrio campbellii strain DS40M4	50.179	96.875	0.486
pilD	Acinetobacter baumannii D1279779	49.27	95.139	0.469
pilD	Acinetobacter nosocomialis M2	48.905	95.139	0.465
pilD	Neisseria gonorrhoeae MS11	48.148	93.75	0.451