Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   C5F70_RS06040 Genome accession   NZ_CP026880
Coordinates   1276428..1278641 (+) Length   737 a.a.
NCBI ID   WP_104902890.1    Uniprot ID   -
Organism   Pseudomonas sp. LH1G9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271428..1283641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F70_RS06025 - 1273676..1274404 (+) 729 WP_104902888.1 response regulator transcription factor -
  C5F70_RS06030 - 1274391..1275761 (+) 1371 WP_104902889.1 sensor histidine kinase -
  C5F70_RS06035 - 1275765..1276280 (-) 516 WP_017848016.1 DUF2062 domain-containing protein -
  C5F70_RS06040 comA 1276428..1278641 (+) 2214 WP_104902890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C5F70_RS06045 exbB 1278751..1279386 (+) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C5F70_RS06050 - 1279383..1279811 (+) 429 WP_046382925.1 biopolymer transporter ExbD -
  C5F70_RS06055 lpxK 1279811..1280821 (+) 1011 WP_104902891.1 tetraacyldisaccharide 4'-kinase -
  C5F70_RS06060 - 1280845..1281030 (+) 186 WP_003174668.1 Trm112 family protein -
  C5F70_RS06065 kdsB 1281027..1281791 (+) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C5F70_RS06070 - 1281791..1282255 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  C5F70_RS06075 murB 1282252..1283271 (+) 1020 WP_017848009.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79780.54 Da        Isoelectric Point: 10.1353

>NTDB_id=273026 C5F70_RS06040 WP_104902890.1 1276428..1278641(+) (comA) [Pseudomonas sp. LH1G9]
MFALALGLLALRFLPALPSAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAEVPMGYWLVSLVGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLPIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASALAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGTQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=273026 C5F70_RS06040 WP_104902890.1 1276428..1278641(+) (comA) [Pseudomonas sp. LH1G9]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGTCTGCCGGGATGCTGTTGGCCCTGGC
AGTGGTGGCGTTGATGTTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGACAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGTGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGGGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCATGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGCGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGTGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCCGCGTGGATACCGGCCGAGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGTTTCGGTTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCTCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTTGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCACGCCGGCGGTGCGGCGGCTGTCGCC
CGTGGACTGCCGATCAAACGGGTCGTCGGTGGCGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTATGGCAATGGCCAGACGCAGTTGATGGCAACCCGAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCCGAGCAGGCGTTTCTG
GCCTCGGCGCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAGGTGGTGG
AGCGCTATCAAGCGTTGGGAACGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-662)

Domain of unknown function (DUF4131) (DUF4131)

(18-163)

Competence protein (Competence)

(194-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

97.558

0.596
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372

Multiple sequence alignment