Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C5F70_RS06045 Genome accession   NZ_CP026880
Coordinates   1278751..1279386 (+) Length   211 a.a.
NCBI ID   WP_046382924.1    Uniprot ID   A0A2N7YSQ7
Organism   Pseudomonas sp. LH1G9     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1273751..1284386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F70_RS06030 - 1274391..1275761 (+) 1371 WP_104902889.1 sensor histidine kinase -
  C5F70_RS06035 - 1275765..1276280 (-) 516 WP_017848016.1 DUF2062 domain-containing protein -
  C5F70_RS06040 comA 1276428..1278641 (+) 2214 WP_104902890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C5F70_RS06045 exbB 1278751..1279386 (+) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C5F70_RS06050 - 1279383..1279811 (+) 429 WP_046382925.1 biopolymer transporter ExbD -
  C5F70_RS06055 lpxK 1279811..1280821 (+) 1011 WP_104902891.1 tetraacyldisaccharide 4'-kinase -
  C5F70_RS06060 - 1280845..1281030 (+) 186 WP_003174668.1 Trm112 family protein -
  C5F70_RS06065 kdsB 1281027..1281791 (+) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C5F70_RS06070 - 1281791..1282255 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  C5F70_RS06075 murB 1282252..1283271 (+) 1020 WP_017848009.1 UDP-N-acetylmuramate dehydrogenase -
  C5F70_RS06080 - 1283346..1284017 (-) 672 WP_017848008.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.02 Da        Isoelectric Point: 7.3613

>NTDB_id=273027 C5F70_RS06045 WP_046382924.1 1278751..1279386(+) (exbB) [Pseudomonas sp. LH1G9]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=273027 C5F70_RS06045 WP_046382924.1 1278751..1279386(+) (exbB) [Pseudomonas sp. LH1G9]
GTGTGGGAATTGGTCAAATCCGGTGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACGCCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAACTGCGTGCCAATTCACCCCTGGGTGAAATCCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCGGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YSQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment