Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1095_RS03215 Genome accession   NZ_CP031875
Coordinates   717595..719616 (-) Length   673 a.a.
NCBI ID   WP_005600837.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 2 str. S1536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712595..724616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1095_RS03205 (D1095_03260) pepP 713704..714990 (-) 1287 WP_005618975.1 Xaa-Pro aminopeptidase -
  D1095_RS03210 (D1095_03265) - 715418..717574 (-) 2157 WP_005596968.1 tetratricopeptide repeat protein -
  D1095_RS03215 (D1095_03270) uvrB 717595..719616 (-) 2022 WP_005600837.1 excinuclease ABC subunit UvrB Machinery gene
  D1095_RS03220 (D1095_03280) efeO 719793..720605 (+) 813 WP_005596972.1 iron uptake system protein EfeO -
  D1095_RS03225 (D1095_03285) efeB 720620..721810 (+) 1191 WP_005600839.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1095_RS03230 (D1095_03290) - 721821..722441 (+) 621 WP_005596976.1 hypothetical protein -
  D1095_RS03235 (D1095_03295) - 722480..723298 (-) 819 WP_005600841.1 PHP domain-containing protein -
  D1095_RS03240 (D1095_03300) - 723302..723892 (-) 591 WP_005596980.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76854.64 Da        Isoelectric Point: 5.1035

>NTDB_id=272497 D1095_RS03215 WP_005600837.1 717595..719616(-) (uvrB) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAEVRDKIGQLRAYLLEI

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272497 D1095_RS03215 WP_005600837.1 717595..719616(-) (uvrB) [Actinobacillus pleuropneumoniae serovar 2 str. S1536]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTGTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACCATTGTAGTTGCTTCTGTTTCAGCCATTTACGGCTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGACCAACGAGAGATCCTCGCTCGTCTTGCCGAATTGCAATATACCCGTAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCGGATGAAATAG
CGTTACGGGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTACCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAGGAAATCAA
GCAAGAATTGGTGGAACGCCGAGAATACTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGCGGACGGTTTGCTGATTATTGATGAAAGCCACGTTACCGT
ACCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCAAGAAAAGAAACGCTGGTGCAATACGGGTTCCGCTTGCCTTCAG
CATTGGATAACCGCCCGTTACGTTTTGAAGAATTTGAACGTCTTGCGCCACAGACAATTTATGTTTCGGCAACACCGGGT
AATTATGAATTAGAAAAATCGAATGGTGATGTGGTGGATCAAGTGGTTCGTCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGTGTGCTGA
TTACTACACTAACAAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTGGAAATTATCCACGATTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATTAA
CTTATTACGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAGGGCTTTTTACGTT
CTGAACGTTCATTAATTCAGACCATTGGACGTGCCGCTCGTAACCTTAACGGCAAGGCGATTCTCTACGGCGACCGCATT
ACCAATTCTATGCAAAAAGCGATTACCGAAACCGAACGTCGCCGAGAAAAACAACAAAAATACAATGAAGAACACGGTAT
TATCCCGCAAGCCCTTAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTTAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTCAAACAACTT
GAGCAACAAATGCGAGATTTCGCTAAAGATTTAGAGTTCGAAAAAGCGGCTGAGGTAAGGGATAAGATTGGGCAGTTGAG
GGCGTATTTGCTAGAAATTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(634-668)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.337

98.217

0.563
  uvrB Streptococcus pneumoniae R6

57.337

98.217

0.563
  uvrB Streptococcus pneumoniae D39

57.337

98.217

0.563

Multiple sequence alignment