Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1100_RS03570 Genome accession   NZ_CP031869
Coordinates   771226..773247 (-) Length   673 a.a.
NCBI ID   WP_005617154.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain WF83     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 766226..778247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1100_RS03550 (D1100_03535) pepP 767391..768674 (-) 1284 WP_005617151.1 Xaa-Pro aminopeptidase -
  D1100_RS03555 (D1100_03540) - 769083..770306 (-) 1224 WP_005617152.1 ATP-binding protein -
  D1100_RS03560 (D1100_03545) - 770442..770831 (-) 390 WP_005614926.1 type II toxin-antitoxin system VapC family toxin -
  D1100_RS03565 (D1100_03550) - 770832..771092 (-) 261 WP_005604117.1 antitoxin -
  D1100_RS03570 (D1100_03555) uvrB 771226..773247 (-) 2022 WP_005617154.1 excinuclease ABC subunit UvrB Machinery gene
  D1100_RS03575 (D1100_03565) efeO 773424..774236 (+) 813 WP_005604121.1 iron uptake system protein EfeO -
  D1100_RS03580 (D1100_03570) efeB 774248..775441 (+) 1194 WP_237601177.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1100_RS03585 (D1100_03575) - 775452..776072 (+) 621 WP_005596976.1 hypothetical protein -
  D1100_RS03590 (D1100_03580) - 776111..776929 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1100_RS03595 (D1100_03585) - 776933..777523 (-) 591 WP_005596980.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76708.49 Da        Isoelectric Point: 5.1545

>NTDB_id=272333 D1100_RS03570 WP_005617154.1 771226..773247(-) (uvrB) [Actinobacillus pleuropneumoniae strain WF83]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEV

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272333 D1100_RS03570 WP_005617154.1 771226..773247(-) (uvrB) [Actinobacillus pleuropneumoniae strain WF83]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTGTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACCATTGTAGTTGCTTCTGTTTCAGCCATTTACGGCTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGATCAACGAGAGATTCTCGCTCGCCTTGCCGAATTGCAATATACTCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTTCCGGCTGAATCAGATGAAATTG
CATTACGAGTTGAACTGTTTGATGACGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGTTTGGGCAAA
GTACCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGTTGGTGGAACGCCGTGAGTATTTCATCAAAGAAAATAAATTATTGGAAGAACAACGCATTACCCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGTATCGAAAACTATTCACGCTACCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGATTATATGCCGGCGGACGGTTTGCTGATTATTGACGAAAGCCATGTTACCGT
GCCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACGCTGGTGCAATACGGTTTCCGCTTGCCGTCTG
CATTGGATAACCGCCCGTTACGCTTTGAAGAATTTGAACGCCTAGCCCCACAGACAATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAACGGTGATGTGGTGGATCAAGTGGTTCGCCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGAGTGTTAA
TTACTACGCTAACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGTTAGTAGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCGATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACAGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAATCGAAGAAAAATCTGCAAATACCTACAAACCGAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCGGTGTTGTTGGAGGTTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB/uvrC motif (UVR)

(634-668)

UvrB interaction domain (UvrB_inter)

(162-252)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae R6

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae D39

57.251

98.366

0.563