Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1101_RS03665 Genome accession   NZ_CP031866
Coordinates   774893..776914 (-) Length   673 a.a.
NCBI ID   WP_058230468.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769893..781914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS03645 (D1101_03665) pepP 771055..772341 (-) 1287 WP_009874699.1 Xaa-Pro aminopeptidase -
  D1101_RS03650 (D1101_03670) - 772750..773973 (-) 1224 WP_039709068.1 ATP-binding protein -
  D1101_RS03655 (D1101_03675) - 774109..774498 (-) 390 WP_005614926.1 type II toxin-antitoxin system VapC family toxin -
  D1101_RS03660 (D1101_03680) - 774499..774759 (-) 261 WP_005604117.1 antitoxin -
  D1101_RS03665 (D1101_03685) uvrB 774893..776914 (-) 2022 WP_058230468.1 excinuclease ABC subunit UvrB Machinery gene
  D1101_RS03670 (D1101_03695) efeO 777091..777903 (+) 813 WP_039709069.1 iron uptake system protein EfeO -
  D1101_RS03675 (D1101_03700) efeB 777915..779108 (+) 1194 WP_005604123.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1101_RS03680 (D1101_03705) - 779119..779739 (+) 621 WP_039709071.1 hypothetical protein -
  D1101_RS03685 (D1101_03710) - 779779..780597 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1101_RS03690 (D1101_03715) - 780601..781191 (-) 591 WP_005611913.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76720.54 Da        Isoelectric Point: 5.1545

>NTDB_id=272278 D1101_RS03665 WP_058230468.1 774893..776914(-) (uvrB) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILTRLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEV

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272278 D1101_RS03665 WP_058230468.1 774893..776914(-) (uvrB) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAGATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACTATCGTAGTGGCTTCTGTTTCCGCCATTTATGGTTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGACCAACGAGAGATCCTTACTCGTCTTGCCGAATTACAATATACCCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTTCCGGCTGAATCAGATGAAATTG
CATTACGAGTTGAACTGTTTGATGACGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGTTTGGGCAAA
GTACCTCGCTATACCATTTATCCAAAAACCCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATCAA
ACAAGAGCTGGTGGAACGCCGCGAGTATTTCATCAAAGAAAATAAATTGCTGGAAGAACAACGCATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGATTATATGCCGGCGGACGGTTTGCTGATTATTGACGAAAGCCACGTGACCGT
ACCACAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACACTAGTGCAATACGGTTTCCGCTTGCCGTCTG
CGTTGGATAACCGCCCACTTCGTTTTGAAGAATTTGAACGCCTAGCCCCACAGACAATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAACGGCGATGTGGTGGATCAAGTGGTTCGCCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGAGTGTTAA
TTACTACGCTAACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGTTAGTAGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CTGAACGTTCATTAATTCAGACCATTGGACGTGCCGCTCGTAACCTTAACGGCAAGGCGATTCTCTACGGCGACCGCATT
ACCAATTCTATGCAAAAAGCGATTACCGAAACCGAACGTCGCCGAGAAAAACAACAAAAATACAATGAAGAACACGGTAT
TATCCCGCAAGCCCTTAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCTGTATTGTTGGAGGTTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB/uvrC motif (UVR)

(634-668)

UvrB interaction domain (UvrB_inter)

(162-252)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.402

98.366

0.565
  uvrB Streptococcus pneumoniae R6

57.402

98.366

0.565
  uvrB Streptococcus pneumoniae D39

57.402

98.366

0.565

Multiple sequence alignment