Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   AM457_RS02635 Genome accession   NZ_CP026761
Coordinates   562595..563068 (-) Length   157 a.a.
NCBI ID   WP_001214063.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557595..568068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS02620 (AM457_02620) pilX 560224..561042 (-) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM457_RS02625 (AM457_02625) pilW 561039..562040 (-) 1002 WP_000079194.1 PilW family protein Machinery gene
  AM457_RS02630 (AM457_02630) pilV 562041..562601 (-) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  AM457_RS02635 (AM457_02635) fimU 562595..563068 (-) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  AM457_RS02640 (AM457_02640) ispH 563238..564188 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM457_RS02645 (AM457_02645) gmk 564311..564940 (+) 630 WP_000015937.1 guanylate kinase -
  AM457_RS02650 (AM457_02650) rpoZ 565013..565291 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM457_RS02655 (AM457_02655) - 565330..565460 (+) 131 Protein_501 hypothetical protein -
  AM457_RS02660 (AM457_02660) - 565500..567605 (+) 2106 WP_001117588.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=272268 AM457_RS02635 WP_001214063.1 562595..563068(-) (fimU) [Acinetobacter baumannii strain AR_0078]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=272268 AM457_RS02635 WP_001214063.1 562595..563068(-) (fimU) [Acinetobacter baumannii strain AR_0078]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAATTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment