Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AM457_RS02620 Genome accession   NZ_CP026761
Coordinates   560224..561042 (-) Length   272 a.a.
NCBI ID   WP_000149370.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 555224..566042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS02605 (AM457_02605) pilE 555443..555868 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  AM457_RS02610 (AM457_02610) pilY2 555865..556347 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  AM457_RS02615 (AM457_02615) pilY1 556358..560212 (-) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  AM457_RS02620 (AM457_02620) pilX 560224..561042 (-) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM457_RS02625 (AM457_02625) pilW 561039..562040 (-) 1002 WP_000079194.1 PilW family protein Machinery gene
  AM457_RS02630 (AM457_02630) pilV 562041..562601 (-) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  AM457_RS02635 (AM457_02635) fimU 562595..563068 (-) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  AM457_RS02640 (AM457_02640) ispH 563238..564188 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM457_RS02645 (AM457_02645) gmk 564311..564940 (+) 630 WP_000015937.1 guanylate kinase -
  AM457_RS02650 (AM457_02650) rpoZ 565013..565291 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM457_RS02655 (AM457_02655) - 565330..565460 (+) 131 Protein_501 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28845.66 Da        Isoelectric Point: 5.6905

>NTDB_id=272265 AM457_RS02620 WP_000149370.1 560224..561042(-) (pilX) [Acinetobacter baumannii strain AR_0078]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASNSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=272265 AM457_RS02620 WP_000149370.1 560224..561042(-) (pilX) [Acinetobacter baumannii strain AR_0078]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAAATTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment