Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1101_RS00395 Genome accession   NZ_CP031866
Coordinates   84469..85074 (-) Length   201 a.a.
NCBI ID   WP_039708911.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae serovar 8 str. 405     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 79469..90074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1101_RS00365 (D1101_00365) - 80218..81207 (+) 990 WP_012262684.1 peptide ABC transporter ATP-binding protein -
  D1101_RS00370 (D1101_00370) psiE 81280..81690 (-) 411 WP_005595704.1 phosphate-starvation-inducible protein PsiE -
  D1101_RS00375 (D1101_00375) - 81768..82400 (-) 633 WP_012262685.1 hydrolase -
  D1101_RS00380 (D1101_00380) - 82455..82799 (-) 345 WP_005595710.1 RidA family protein -
  D1101_RS00385 (D1101_00385) - 82886..83923 (-) 1038 WP_005603248.1 branched-chain amino acid aminotransferase -
  D1101_RS00390 (D1101_00390) grxD 84065..84397 (-) 333 WP_005600046.1 Grx4 family monothiol glutaredoxin -
  D1101_RS00395 (D1101_00395) recR 84469..85074 (-) 606 WP_039708911.1 recombination mediator RecR Machinery gene
  D1101_RS00400 (D1101_00400) - 85145..85474 (-) 330 WP_005600053.1 YbaB/EbfC family nucleoid-associated protein -
  D1101_RS00405 (D1101_00405) - 85643..86500 (-) 858 WP_218633952.1 energy transducer TonB family protein -
  D1101_RS00410 (D1101_00410) exbD 86510..86899 (-) 390 WP_005595717.1 TonB system transport protein ExbD -
  D1101_RS00415 (D1101_00415) exbB 86944..87396 (-) 453 WP_005595719.1 TonB-system energizer ExbB -
  D1101_RS00420 (D1101_00420) glpE 87584..87910 (+) 327 WP_039708901.1 thiosulfate sulfurtransferase GlpE -
  D1101_RS00425 (D1101_00425) - 87954..88799 (+) 846 WP_005611180.1 co-chaperone YbbN -
  D1101_RS00430 (D1101_00430) dhaM 88874..89281 (-) 408 WP_005611183.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  D1101_RS00435 (D1101_00435) dhaL 89290..89916 (-) 627 WP_005600065.1 dihydroxyacetone kinase subunit DhaL -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22195.40 Da        Isoelectric Point: 6.4865

>NTDB_id=272265 D1101_RS00395 WP_039708911.1 84469..85074(-) (recR) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
MQISPLLENLMEALRALPGVGPKSAQRMAYHLLQRNRSGGINLSKALNEAMTHIGHCRSCRTFTEEDECNICKNPRRQMS
GQLCVVEMPEDIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQNRLENESFHEVILATNPTIEGDATANYIAEM
CRIHNVKVTRIAHGIPVGGSLEMVDGTTLSHSFAGRRDVSL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=272265 D1101_RS00395 WP_039708911.1 84469..85074(-) (recR) [Actinobacillus pleuropneumoniae serovar 8 str. 405]
ATGCAAATTAGCCCTTTACTCGAAAATCTGATGGAAGCCCTACGTGCATTACCTGGTGTCGGCCCGAAATCCGCGCAGCG
TATGGCATACCATTTATTGCAACGCAATCGTTCCGGCGGTATCAATTTATCCAAAGCCTTAAATGAAGCGATGACGCATA
TCGGTCATTGCCGTTCTTGCCGTACTTTTACCGAAGAAGACGAATGCAATATTTGTAAAAATCCTCGTCGCCAAATGAGC
GGTCAGCTTTGCGTAGTAGAAATGCCGGAAGATATTCAAGCGATTGAACAAACCGGACAGTTTTCGGGACGTTATTTCGT
ATTAATGGGACATCTTTCACCGTTGGACGGTATCGGACCGAGAGAAATCGGCTTGGATTTGTTACAAAACCGTTTAGAAA
ACGAATCTTTTCACGAAGTTATTCTAGCTACCAATCCGACCATTGAAGGTGATGCCACCGCCAACTATATTGCGGAAATG
TGCCGCATTCACAACGTGAAAGTAACTCGAATTGCGCATGGGATTCCGGTCGGCGGTTCATTAGAAATGGTGGACGGTAC
GACCCTTTCCCACTCTTTTGCCGGCAGACGAGATGTTTCGTTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(42-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

42.714

99.005

0.423
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.5

99.502

0.423

Multiple sequence alignment