Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   AM457_RS02625 Genome accession   NZ_CP026761
Coordinates   561039..562040 (-) Length   333 a.a.
NCBI ID   WP_000079194.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0078     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 556039..567040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM457_RS02615 (AM457_02615) pilY1 556358..560212 (-) 3855 WP_000768953.1 PilC/PilY family type IV pilus protein Machinery gene
  AM457_RS02620 (AM457_02620) pilX 560224..561042 (-) 819 WP_000149370.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM457_RS02625 (AM457_02625) pilW 561039..562040 (-) 1002 WP_000079194.1 PilW family protein Machinery gene
  AM457_RS02630 (AM457_02630) pilV 562041..562601 (-) 561 WP_085941358.1 type IV pilus modification protein PilV Machinery gene
  AM457_RS02635 (AM457_02635) fimU 562595..563068 (-) 474 WP_001214063.1 pilus assembly FimT family protein Machinery gene
  AM457_RS02640 (AM457_02640) ispH 563238..564188 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM457_RS02645 (AM457_02645) gmk 564311..564940 (+) 630 WP_000015937.1 guanylate kinase -
  AM457_RS02650 (AM457_02650) rpoZ 565013..565291 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM457_RS02655 (AM457_02655) - 565330..565460 (+) 131 Protein_501 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35878.52 Da        Isoelectric Point: 5.3057

>NTDB_id=272266 AM457_RS02625 WP_000079194.1 561039..562040(-) (pilW) [Acinetobacter baumannii strain AR_0078]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEEQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPEVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQTVHAADNRTRFLRRVYS
VTIALRNAMGETL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=272266 AM457_RS02625 WP_000079194.1 561039..562040(-) (pilW) [Acinetobacter baumannii strain AR_0078]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGAACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCAGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGAGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGGATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAAGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGACTGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACACTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

98.799

100

0.988

Multiple sequence alignment