Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1105_RS03270 Genome accession   NZ_CP031862
Coordinates   726282..728303 (-) Length   673 a.a.
NCBI ID   WP_005614930.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 8329     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721282..733303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1105_RS03245 (D1105_03245) pepP 721364..722650 (-) 1287 WP_005614923.1 Xaa-Pro aminopeptidase -
  D1105_RS03250 (D1105_03250) - 723059..724282 (-) 1224 WP_005614925.1 ATP-binding protein -
  D1105_RS03255 (D1105_03255) - 724418..724807 (-) 390 WP_005614926.1 type II toxin-antitoxin system VapC family toxin -
  D1105_RS03260 (D1105_03260) - 724808..725068 (-) 261 WP_005604117.1 antitoxin -
  D1105_RS03265 (D1105_03265) - 725414..726250 (+) 837 WP_005614928.1 DUF6216 family protein -
  D1105_RS03270 (D1105_03270) uvrB 726282..728303 (-) 2022 WP_005614930.1 excinuclease ABC subunit UvrB Machinery gene
  D1105_RS03275 (D1105_03280) efeO 728480..729292 (+) 813 WP_005607533.1 iron uptake system protein EfeO -
  D1105_RS03280 (D1105_03285) efeB 729304..730497 (+) 1194 WP_005614931.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1105_RS03285 (D1105_03290) - 730508..731128 (+) 621 WP_005596976.1 hypothetical protein -
  D1105_RS03290 (D1105_03295) - 731167..731985 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1105_RS03295 (D1105_03300) - 731989..732579 (-) 591 WP_005596980.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76693.52 Da        Isoelectric Point: 5.1545

>NTDB_id=272056 D1105_RS03270 WP_005614930.1 726282..728303(-) (uvrB) [Actinobacillus pleuropneumoniae strain 8329]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPVDGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
SYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHGITPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEI

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272056 D1105_RS03270 WP_005614930.1 726282..728303(-) (uvrB) [Actinobacillus pleuropneumoniae strain 8329]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGCTAAATGACGGATTGGCGCATCAAACGTTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCTA
ATGTGATCGCTCAACTCAATCGTCCGGCAATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCCTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACTATCGTAGTGGCTTCTGTTTCCGCCATTTATGGTTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTGCAAGTGGGGGCGATTATCGACCAACGAGAGATCCTCGCTCGCCTTGCCGAATTGCAATATACCCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCGGATGAAATAG
CGTTACGGGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTACCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAGGAAATCAA
GCAAGAATTGGTGGAACGCCGAGAATACTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGCATTGAAAACTATTCACGCTATCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGTGGACGGTTTGCTGATTATTGATGAAAGCCACGTTACCGT
ACCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCAAGAAAAGAAACGCTGGTGCAATACGGGTTCCGCTTGCCTTCAG
CATTGGATAACCGCCCGTTACGTTTTGAAGAATTTGAACGTCTTGCGCCACAGACAATTTATGTTTCGGCAACACCGGGT
AGTTATGAATTAGAAAAATCGAATGGTGATGTGGTGGATCAAGTGGTTCGTCCAACGGGATTATTAGACCCGATCATCGA
AGTTCGTCCGGTTGCGACGCAGGTTGATGATGTACTGTCCGAAATTCACAAACGAGTAGCGGTAGATGAACGTGTGCTAA
TTACTACGCTGACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCCGCTCGAAACCTCAACGGCAAAGCGATTCTCTACGGCGACCGCATT
ACCAATTCTATGCAAAAAGCGATTACCGAAACCGAACGCCGCCGAGAAAAACAGCAAAAATACAACGAAGAACACGGTAT
TACTCCGCAAGCCCTCAATAAGAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGTAAACAAG
CGGTTAAAATCGAAGAAAAATCTGCAAATACCTATAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTCAAACAGTTA
GAACAACAAATGCGAGATTTTGCTAAGGATCTAGAGTTCGAAAAAGCAGCTGCGGTGAGGGATAAGATTGGGCAGTTGAA
GGCAGTGTTGTTGGAGATCTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(634-668)

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.402

98.366

0.565
  uvrB Streptococcus pneumoniae R6

57.402

98.366

0.565
  uvrB Streptococcus pneumoniae D39

57.402

98.366

0.565