Detailed information
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | C2I28_RS07335 | Genome accession | NZ_CP026736 |
| Coordinates | 1409110..1409472 (-) | Length | 120 a.a. |
| NCBI ID | WP_028411997.1 | Uniprot ID | - |
| Organism | Priestia megaterium strain YC4-R4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1404110..1414472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2I28_RS07325 (C2I28_07235) | - | 1404853..1407483 (+) | 2631 | WP_049166295.1 | DEAD/DEAH box helicase | - |
| C2I28_RS07330 (C2I28_07240) | - | 1407781..1408827 (+) | 1047 | WP_099331341.1 | LysM peptidoglycan-binding domain-containing protein | - |
| C2I28_RS07335 (C2I28_07245) | ssbB | 1409110..1409472 (-) | 363 | WP_028411997.1 | single-stranded DNA-binding protein | Machinery gene |
| C2I28_RS07340 (C2I28_07250) | - | 1409569..1410006 (+) | 438 | WP_099331342.1 | YwpF family protein | - |
| C2I28_RS07345 (C2I28_07255) | - | 1410530..1410952 (+) | 423 | WP_099331343.1 | helix-turn-helix domain-containing protein | - |
| C2I28_RS07350 (C2I28_07260) | fabZ | 1410981..1411415 (-) | 435 | WP_013059788.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| C2I28_RS07355 (C2I28_07265) | - | 1411499..1412320 (-) | 822 | WP_099331344.1 | flagellar hook-basal body protein | - |
| C2I28_RS07360 (C2I28_07270) | - | 1412344..1413168 (-) | 825 | WP_099331345.1 | flagellar hook-basal body protein | - |
| C2I28_RS07365 (C2I28_07275) | - | 1413283..1414284 (-) | 1002 | WP_013059791.1 | rod shape-determining protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13412.09 Da Isoelectric Point: 7.1647
>NTDB_id=272050 C2I28_RS07335 WP_028411997.1 1409110..1409472(-) (ssbB) [Priestia megaterium strain YC4-R4]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE
Nucleotide
Download Length: 363 bp
>NTDB_id=272050 C2I28_RS07335 WP_028411997.1 1409110..1409472(-) (ssbB) [Priestia megaterium strain YC4-R4]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACCAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACCAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.143 |
93.333 |
0.533 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
48.8 |
100 |
0.508 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.547 |
88.333 |
0.508 |