Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssbB   Type   Machinery gene
Locus tag   C2I28_RS07335 Genome accession   NZ_CP026736
Coordinates   1409110..1409472 (-) Length   120 a.a.
NCBI ID   WP_028411997.1    Uniprot ID   -
Organism   Priestia megaterium strain YC4-R4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 1404110..1414472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I28_RS07325 (C2I28_07235) - 1404853..1407483 (+) 2631 WP_049166295.1 DEAD/DEAH box helicase -
  C2I28_RS07330 (C2I28_07240) - 1407781..1408827 (+) 1047 WP_099331341.1 LysM peptidoglycan-binding domain-containing protein -
  C2I28_RS07335 (C2I28_07245) ssbB 1409110..1409472 (-) 363 WP_028411997.1 single-stranded DNA-binding protein Machinery gene
  C2I28_RS07340 (C2I28_07250) - 1409569..1410006 (+) 438 WP_099331342.1 YwpF family protein -
  C2I28_RS07345 (C2I28_07255) - 1410530..1410952 (+) 423 WP_099331343.1 helix-turn-helix domain-containing protein -
  C2I28_RS07350 (C2I28_07260) fabZ 1410981..1411415 (-) 435 WP_013059788.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C2I28_RS07355 (C2I28_07265) - 1411499..1412320 (-) 822 WP_099331344.1 flagellar hook-basal body protein -
  C2I28_RS07360 (C2I28_07270) - 1412344..1413168 (-) 825 WP_099331345.1 flagellar hook-basal body protein -
  C2I28_RS07365 (C2I28_07275) - 1413283..1414284 (-) 1002 WP_013059791.1 rod shape-determining protein -

Sequence


Protein


Download         Length: 120 a.a.        Molecular weight: 13412.09 Da        Isoelectric Point: 7.1647

>NTDB_id=272050 C2I28_RS07335 WP_028411997.1 1409110..1409472(-) (ssbB) [Priestia megaterium strain YC4-R4]
MINHIVLVGRLTKKPELRYTHEGIAVSTITLAINRTFRNVEGEYDADFVNITLWRKNAENTAAYCDKGAVVGVVGRVQTR
TFENNLQQRVYMTDVVADAVKFLSGKPSDSSSFGSNQQEE

Nucleotide


Download         Length: 363 bp        

>NTDB_id=272050 C2I28_RS07335 WP_028411997.1 1409110..1409472(-) (ssbB) [Priestia megaterium strain YC4-R4]
ATGATTAACCATATTGTTCTTGTAGGAAGACTGACCAAAAAGCCGGAGCTTCGATATACCCATGAAGGGATTGCCGTATC
TACTATTACGTTAGCAATTAATCGAACGTTTCGAAATGTTGAAGGTGAATATGATGCTGATTTTGTCAACATTACTCTGT
GGAGAAAAAATGCAGAAAATACAGCTGCTTACTGTGATAAAGGAGCGGTTGTAGGCGTGGTAGGGCGTGTACAAACGCGC
ACATTTGAAAATAATCTTCAGCAACGAGTATATATGACCGACGTTGTGGCTGATGCGGTTAAATTTTTAAGTGGAAAGCC
ATCTGATTCTTCTTCATTTGGTTCAAATCAACAAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

93.333

0.533

  ssb Latilactobacillus sakei subsp. sakei 23K

48.8

100

0.508

  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

88.333

0.508


Multiple sequence alignment