Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1106_RS03560 Genome accession   NZ_CP031861
Coordinates   766592..768613 (-) Length   673 a.a.
NCBI ID   WP_237594206.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain N 273     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761592..773613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1106_RS03550 (D1106_03560) pepP 762697..763983 (-) 1287 WP_237594204.1 Xaa-Pro aminopeptidase -
  D1106_RS03555 (D1106_03565) - 764415..766571 (-) 2157 WP_237594205.1 tetratricopeptide repeat protein -
  D1106_RS03560 (D1106_03570) uvrB 766592..768613 (-) 2022 WP_237594206.1 excinuclease ABC subunit UvrB Machinery gene
  D1106_RS03565 (D1106_03580) efeO 768790..769602 (+) 813 WP_117374109.1 iron uptake system protein EfeO -
  D1106_RS03570 (D1106_03585) efeB 769614..770807 (+) 1194 WP_009874702.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1106_RS03575 (D1106_03590) - 770818..771438 (+) 621 WP_237594207.1 Fe2+/Pb2+ permease -
  D1106_RS03580 (D1106_03595) - 771477..772295 (-) 819 WP_237594208.1 PHP domain-containing protein -
  D1106_RS03585 (D1106_03600) - 772299..772889 (-) 591 WP_237593026.1 DNA glycosylase -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76884.66 Da        Isoelectric Point: 5.1035

>NTDB_id=272002 D1106_RS03560 WP_237594206.1 766592..768613(-) (uvrB) [Actinobacillus pleuropneumoniae strain N 273]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILTRLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHGIIPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAEVRDKIGQLRAYLLEI

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=272002 D1106_RS03560 WP_237594206.1 766592..768613(-) (uvrB) [Actinobacillus pleuropneumoniae strain N 273]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAGATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACTATCGTAGTGGCTTCTGTTTCCGCCATTTATGGTTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGACCAACGAGAGATCCTTACTCGTCTTGCCGAATTACAATATACCCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCAGACGAAATTG
CATTACGTGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTGCCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGTTGGTGGAACGCCGCGAGTATTTCATCAAAGAAAATAAATTGTTGGAAGAACAACGTATTACTCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGTATCGAAAACTATTCACGCTACCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGCAGACGGCTTGCTGATTATTGACGAAAGCCACGTTACCGT
GCCACAAATCGGCGGTATGTATCGAGGCGACCGAGCTAGAAAAGAAACACTAGTGCAATACGGTTTCCGTTTGCCTTCAG
CATTGGATAACCGCCCGTTACGCTTTGAAGAATTTGAACGCCTTGCACCACAGACAATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAATGGTGATGTAGTGGATCAGGTGGTTCGCCCAACAGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGTGTGCTGA
TTACTACACTAACAAAAAAAATGGCGGAAGATTTAACCGATTACCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTGGAAATTATCCACGATTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATTAA
CTTATTACGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAGGGCTTTTTACGTT
CTGAACGTTCATTAATTCAGACCATTGGACGTGCCGCTCGTAACCTTAACGGCAAGGCGATTCTCTACGGCGACCGCATT
ACCAATTCTATGCAAAAAGCGATTACCGAAACCGAACGTCGCCGAGAAAAACAACAAAAATACAATGAAGAACACGGTAT
TATCCCGCAAGCCCTTAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTTAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTCAAACAACTT
GAGCAACAAATGCGAGATTTCGCTAAAGATTTAGAGTTCGAAAAAGCGGCTGAGGTAAGGGATAAGATTGGGCAGTTGAG
GGCGTATTTGCTAGAAATTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB interaction domain (UvrB_inter)

(162-252)

UvrB/uvrC motif (UVR)

(634-668)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.337

98.217

0.563
  uvrB Streptococcus pneumoniae R6

57.337

98.217

0.563
  uvrB Streptococcus pneumoniae D39

57.337

98.217

0.563