Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AM442_RS05980 Genome accession   NZ_CP026711
Coordinates   1231895..1232305 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain AR_0063     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226895..1237305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM442_RS05965 (AM442_05965) - 1227884..1230190 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  AM442_RS05970 (AM442_05970) - 1230235..1231008 (-) 774 WP_000682843.1 SDR family oxidoreductase -
  AM442_RS05975 (AM442_05975) mazG 1231120..1231926 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  AM442_RS05980 (AM442_05980) comEA 1231895..1232305 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  AM442_RS05985 (AM442_05985) pcnB 1232430..1233893 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  AM442_RS05990 (AM442_05990) folK 1233890..1234372 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  AM442_RS05995 (AM442_05995) panB 1234418..1235227 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  AM442_RS06000 (AM442_06000) panC 1235231..1236079 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  AM442_RS06005 (AM442_06005) rapZ 1236102..1236953 (+) 852 WP_000821671.1 RNase adapter RapZ -
  AM442_RS06010 (AM442_06010) - 1236950..1237219 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=271945 AM442_RS05980 WP_002041921.1 1231895..1232305(+) (comEA) [Acinetobacter baumannii strain AR_0063]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=271945 AM442_RS05980 WP_002041921.1 1231895..1232305(+) (comEA) [Acinetobacter baumannii strain AR_0063]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment