Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AM435_RS06650 Genome accession   NZ_CP026707
Coordinates   1114655..1115362 (+) Length   235 a.a.
NCBI ID   WP_031975528.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0056     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1109655..1120362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM435_RS06635 (AM435_06635) - 1112474..1113280 (+) 807 WP_001237344.1 peptidoglycan DD-metalloendopeptidase family protein -
  AM435_RS06640 (AM435_06640) - 1113277..1113702 (-) 426 WP_001026230.1 GNAT family N-acetyltransferase -
  AM435_RS06645 (AM435_06645) - 1113794..1114216 (-) 423 WP_001195082.1 OsmC family protein -
  AM435_RS20960 - 1114295..1114414 (-) 120 Protein_1082 hypothetical protein -
  AM435_RS06650 (AM435_06650) crp 1114655..1115362 (+) 708 WP_031975528.1 cAMP-activated global transcriptional regulator CRP Regulator
  AM435_RS06655 (AM435_06655) - 1115523..1116572 (+) 1050 WP_001159802.1 NADP(H)-dependent aldo-keto reductase -
  AM435_RS06660 (AM435_06660) - 1116632..1117411 (-) 780 WP_001034598.1 M48 family metallopeptidase -
  AM435_RS06665 (AM435_06665) - 1117528..1117845 (-) 318 WP_000776215.1 hypothetical protein -
  AM435_RS06670 (AM435_06670) - 1117968..1119287 (-) 1320 WP_000517792.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26514.14 Da        Isoelectric Point: 4.5905

>NTDB_id=271849 AM435_RS06650 WP_031975528.1 1114655..1115362(+) (crp) [Acinetobacter baumannii strain AR_0056]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDECEIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=271849 AM435_RS06650 WP_031975528.1 1114655..1115362(+) (crp) [Acinetobacter baumannii strain AR_0056]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAATGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATACTTCATTAGAAGAAACTCCAGTCACTGATGAAGACTATGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

47.343

88.085

0.417
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4

Multiple sequence alignment