Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1109_RS00650 Genome accession   NZ_CP031858
Coordinates   144889..146910 (-) Length   673 a.a.
NCBI ID   WP_005617154.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain A-85/14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 139889..151910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1109_RS00625 (D1109_00605) - 139903..140943 (+) 1041 WP_005603118.1 IS481 family transposase -
  D1109_RS00630 (D1109_00610) pepP 141052..142338 (-) 1287 WP_237611191.1 Xaa-Pro aminopeptidase -
  D1109_RS00635 (D1109_00615) - 142747..143970 (-) 1224 WP_237611192.1 ATP-binding protein -
  D1109_RS00640 (D1109_00620) - 144105..144494 (-) 390 WP_215577551.1 type II toxin-antitoxin system VapC family toxin -
  D1109_RS00645 (D1109_00625) - 144495..144755 (-) 261 WP_215577552.1 antitoxin -
  D1109_RS00650 (D1109_00630) uvrB 144889..146910 (-) 2022 WP_005617154.1 excinuclease ABC subunit UvrB Machinery gene
  D1109_RS00655 (D1109_00640) efeO 147087..147899 (+) 813 WP_005604121.1 iron uptake system protein EfeO -
  D1109_RS00660 (D1109_00645) efeB 147911..149104 (+) 1194 WP_237611193.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1109_RS00665 (D1109_00650) - 149115..149735 (+) 621 WP_005596976.1 hypothetical protein -
  D1109_RS00670 (D1109_00655) - 149774..150592 (-) 819 WP_237594208.1 PHP domain-containing protein -
  D1109_RS00675 (D1109_00660) - 150596..151186 (-) 591 WP_005611913.1 hypothetical protein -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76708.49 Da        Isoelectric Point: 5.1545

>NTDB_id=271826 D1109_RS00650 WP_005617154.1 144889..146910(-) (uvrB) [Actinobacillus pleuropneumoniae strain A-85/14]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILARLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEV

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=271826 D1109_RS00650 WP_005617154.1 144889..146910(-) (uvrB) [Actinobacillus pleuropneumoniae strain A-85/14]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTGTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAAATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACCATTGTAGTTGCTTCTGTTTCAGCCATTTACGGCTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGATCAACGAGAGATTCTCGCTCGCCTTGCCGAATTGCAATATACTCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTTCCGGCTGAATCAGATGAAATTG
CATTACGAGTTGAACTGTTTGATGACGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGTTTGGGCAAA
GTACCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGTTGGTGGAACGCCGTGAGTATTTCATCAAAGAAAATAAATTATTGGAAGAACAACGCATTACCCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGTATCGAAAACTATTCACGCTACCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGATTATATGCCGGCGGACGGTTTGCTGATTATTGACGAAAGCCATGTTACCGT
GCCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACGCTGGTGCAATACGGTTTCCGCTTGCCGTCTG
CATTGGATAACCGCCCGTTACGCTTTGAAGAATTTGAACGCCTAGCCCCACAGACAATTTATGTTTCGGCAACACCGGGC
AATTATGAATTAGAAAAATCAAACGGTGATGTGGTGGATCAAGTGGTTCGCCCAACGGGATTATTAGACCCGATCATAGA
AGTTCGCCCTGTGGCCACGCAAGTTGATGATGTGTTATCGGAAATCCATAAACGAGTGGCGGTTGATGAACGAGTGTTAA
TTACTACGCTAACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGCGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGTTAGTAGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCGATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACAGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCGGTGTTGTTGGAGGTTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB/uvrC motif (UVR)

(634-668)

UvrB interaction domain (UvrB_inter)

(162-252)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae R6

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae D39

57.251

98.366

0.563