Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D1110_RS03565 Genome accession   NZ_CP031856
Coordinates   766853..768874 (-) Length   673 a.a.
NCBI ID   WP_237586239.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain 16287-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 761853..773874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1110_RS03545 (D1110_03540) pepP 763015..764301 (-) 1287 WP_237586237.1 Xaa-Pro aminopeptidase -
  D1110_RS03550 (D1110_03545) - 764710..765933 (-) 1224 WP_237586238.1 ATP-binding protein -
  D1110_RS03555 (D1110_03550) - 766069..766458 (-) 390 WP_215577551.1 type II toxin-antitoxin system VapC family toxin -
  D1110_RS03560 (D1110_03555) - 766459..766719 (-) 261 WP_215577552.1 antitoxin -
  D1110_RS03565 (D1110_03560) uvrB 766853..768874 (-) 2022 WP_237586239.1 excinuclease ABC subunit UvrB Machinery gene
  D1110_RS03570 (D1110_03570) efeO 769051..769863 (+) 813 WP_117374109.1 iron uptake system protein EfeO -
  D1110_RS03575 (D1110_03575) efeB 769875..771068 (+) 1194 WP_205470243.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  D1110_RS03580 (D1110_03580) - 771079..771699 (+) 621 WP_005607537.1 hypothetical protein -
  D1110_RS03585 (D1110_03585) - 771739..772557 (-) 819 WP_005604126.1 PHP domain-containing protein -
  D1110_RS03590 (D1110_03590) - 772561..773151 (-) 591 WP_117374111.1 DNA glycosylase -

Sequence

Protein


Download         Length: 673 a.a.        Molecular weight: 76752.54 Da        Isoelectric Point: 5.1545

>NTDB_id=271786 D1110_RS03565 WP_237586239.1 766853..768874(-) (uvrB) [Actinobacillus pleuropneumoniae strain 16287-1]
MSKQGKPFILHSPFKPSGDQPSAIAKLTEGLNDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYAEM
KAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINEQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDVDAYMQM
MLHLQVGAIIDQREILTRLAELQYTRNDQAFQRSTFRVRGEVIDIFPAESDEIALRVELFDDEIESLSLFDPLTGHSLGK
VPRYTIYPKTHYVTPRERILNAIEEIKQELVERREYFIKENKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSGRK
EGEPPPTLFDYMPADGLLIIDESHVTVPQIGGMYRGDRARKETLVQYGFRLPSALDNRPLRFEEFERLAPQTIYVSATPG
NYELEKSNGDVVDQVVRPTGLLDPIIEVRPVATQVDDVLSEIHKRVAVDERVLITTLTKKMAEDLTDYLDEHGVRVRYLH
SDIDTVERVEIIHDLRMGMFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYGDRI
TNSMQKAITETERRREKQQKYNEEHSITPQALNKKVGELLDIGQTDKPKRGKQAVKIEEKSANTYKPKSRKELEKELKQL
EQQMRDFAKDLEFEKAAAVRDKIGQLKAVLLEI

Nucleotide


Download         Length: 2022 bp        

>NTDB_id=271786 D1110_RS03565 WP_237586239.1 766853..768874(-) (uvrB) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGAGCAAGCAAGGCAAACCTTTTATTTTACATAGCCCGTTTAAACCCTCTGGCGATCAGCCGTCAGCGATTGCCAAATT
GACCGAAGGGTTAAATGACGGATTGGCGCATCAAACGCTACTGGGGGTAACCGGTTCGGGTAAAACCTTTACCATTGCCA
ATGTGATTGCTCAACTCAATCGCCCTGCGATGTTGCTTGCGCCGAATAAAACGCTTGCCGCTCAGCTGTATGCCGAGATG
AAAGCTTTCTTCCCAGAAAATGCGGTGGAATACTTTGTCTCTTACTATGACTATTACCAACCGGAAGCCTATGTGCCGAG
TAGCGATACTTTTATCGAAAAAGATGCGTCGATTAACGAACAGATCGAACAGATGCGACTGTCGGCAACCAAATCATTCC
TTGAACGCCGAGATACTATCGTAGTGGCTTCTGTTTCCGCCATTTATGGTTTGGGGGACGTGGACGCTTATATGCAAATG
ATGTTGCATTTACAAGTGGGGGCGATTATCGACCAACGAGAGATCCTTACTCGTCTTGCCGAATTACAATATACCCGCAA
CGATCAAGCATTTCAGCGTTCGACTTTCCGTGTGCGTGGCGAAGTGATTGATATTTTCCCTGCCGAATCAGACGAAATTG
CATTACGTGTTGAATTGTTTGACGATGAAATCGAAAGCCTTTCGTTGTTTGATCCGCTTACCGGACATAGCTTGGGCAAA
GTGCCTCGCTATACCATTTATCCGAAAACGCACTACGTTACCCCTCGTGAACGCATTTTGAATGCGATTGAAGAAATTAA
ACAAGAGTTGGTGGAACGCCGTGAGTATTTCATCAAAGAAAATAAATTATTGGAAGAACAACGCATTACGCAACGCACGC
AATTCGATATTGAAATGATGAATGAGCTGGGCTATTGCTCGGGTATCGAAAACTATTCACGCTACCTGTCGGGCAGAAAA
GAGGGCGAACCGCCTCCGACATTATTCGACTATATGCCGGCGGACGGCTTGCTGATTATTGACGAAAGCCACGTTACCGT
GCCGCAAATCGGCGGTATGTATCGAGGCGACCGAGCCAGAAAAGAAACGTTGGTGCAATACGGTTTCCGCTTGCCGTCTG
CATTGGATAACCGCCCGTTACGCTTTGAAGAATTTGAACGCCTAGCCCCACAGACAATTTATGTTTCGGCAACACCGGGT
AATTATGAATTAGAAAAATCGAATGGTGATGTGGTGGATCAAGTGGTTCGTCCAACGGGATTATTAGACCCGATCATCGA
AGTTCGTCCGGTTGCGACGCAGGTTGATGATGTACTGTCCGAAATTCACAAACGAGTAGCGGTAGATGAACGTGTGCTAA
TTACTACGCTGACCAAAAAAATGGCGGAAGATTTAACCGATTATCTCGATGAACACGGCGTGCGTGTGCGTTATCTGCAT
AGTGATATTGATACGGTTGAACGGGTAGAAATTATTCACGACTTGCGTATGGGAATGTTTGACGTATTGGTCGGCATCAA
CTTATTGCGTGAGGGCTTGGATATGCCGGAAGTGTCGCTGGTGGCGATTTTAGATGCGGATAAAGAAGGCTTTTTACGTT
CCGAACGTTCATTAATTCAGACCATCGGACGTGCAGCTCGAAACCTGAACGGTAAAGCAATTCTTTACGGCGACCGCATT
ACTAACTCTATGCAAAAAGCAATTACCGAAACCGAACGCCGCCGAGAAAAACAACAAAAATACAACGAAGAACACAGTAT
TACTCCGCAAGCCCTCAACAAAAAAGTAGGCGAATTGCTCGACATCGGACAAACCGACAAGCCGAAACGAGGCAAACAAG
CGGTCAAAATCGAAGAAAAATCTGCAAATACCTACAAACCAAAATCCCGCAAAGAGCTGGAAAAAGAACTTAAACAGCTC
GAGCAACAAATGCGAGATTTCGCTAAAGATCTCGAGTTTGAAAAAGCGGCAGCGGTAAGGGATAAAATTGGGCAGTTGAA
GGCGGTGTTGTTGGAGATTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-100)

UvrB interaction domain (UvrB_inter)

(162-252)

Ultra-violet resistance protein B (UvrB)

(555-596)

UvrB/uvrC motif (UVR)

(634-668)

Helicase conserved C-terminal domain (Helicase_C)

(439-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae R6

57.251

98.366

0.563
  uvrB Streptococcus pneumoniae D39

57.251

98.366

0.563